RNA–Protein interactions for RNA: ENST00000226574.8

NFKB1-201, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NFKB1, Length 4,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-201ENST00000226574 NECTIN2Q92692 538 aa17.14■□□□□ 0.33
NFKB1-201ENST00000226574 NCOA1Q15788 1441 aa17.14■□□□□ 0.33
NFKB1-201ENST00000226574 AMER1Q5JTC6 1135 aaPredicted RBP17.13■□□□□ 0.33
NFKB1-201ENST00000226574 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
NFKB1-201ENST00000226574 GOLGA6L4A6NEF3 574 aa17.12■□□□□ 0.33
NFKB1-201ENST00000226574 LTV1Q96GA3 475 aaPredicted RBP17.12■□□□□ 0.33
NFKB1-201ENST00000226574 EXOSC9Q06265 439 aaKnown RBP17.12■□□□□ 0.33
NFKB1-201ENST00000226574 MIA2Q96PC5 1412 aa17.11■□□□□ 0.33
NFKB1-201ENST00000226574 DAPK1P53355 1430 aa17.11■□□□□ 0.33
NFKB1-201ENST00000226574 RILPL2Q969X0 211 aa17.11■□□□□ 0.33
NFKB1-201ENST00000226574 TRAK2O60296 914 aa17.1■□□□□ 0.33
NFKB1-201ENST00000226574 DDX19BQ9UMR2 479 aa17.1■□□□□ 0.33
NFKB1-201ENST00000226574 DDX11L8A8MPP1 907 aa17.1■□□□□ 0.33
NFKB1-201ENST00000226574 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.09■□□□□ 0.33
NFKB1-201ENST00000226574 MCCP23508 829 aa17.09■□□□□ 0.33
NFKB1-201ENST00000226574 DRC7Q8IY82 874 aa17.09■□□□□ 0.33
NFKB1-201ENST00000226574 ZRSR1Q15695 479 aaKnown RBP17.07■□□□□ 0.32
NFKB1-201ENST00000226574 TOPBP1Q92547 1522 aa17.07■□□□□ 0.32
NFKB1-201ENST00000226574 DIAPH1O60610 1272 aaKnown RBP17.06■□□□□ 0.32
NFKB1-201ENST00000226574 MPNDQ8N594 471 aa17.06■□□□□ 0.32
NFKB1-201ENST00000226574 SLFN5Q08AF3 891 aa17.06■□□□□ 0.32
NFKB1-201ENST00000226574 KIAA1211Q6ZU35 1233 aa17.06■□□□□ 0.32
NFKB1-201ENST00000226574 EVC2Q86UK5 1308 aa17.05■□□□□ 0.32
NFKB1-201ENST00000226574 FAM13BQ9NYF5 915 aa17.05■□□□□ 0.32
NFKB1-201ENST00000226574 MCTP1Q6DN14 999 aa17.04■□□□□ 0.32
NFKB1-201ENST00000226574 RNF214Q8ND24 703 aa17.04■□□□□ 0.32
NFKB1-201ENST00000226574 CHMP3Q9Y3E7 222 aa17.04■□□□□ 0.32
NFKB1-201ENST00000226574 STK31Q9BXU1 1019 aa17.04■□□□□ 0.32
NFKB1-201ENST00000226574 C9orf84Q5VXU9 1444 aa17.03■□□□□ 0.32
NFKB1-201ENST00000226574 ST18O60284 1047 aa17.03■□□□□ 0.32
NFKB1-201ENST00000226574 ABCC5O15440 1437 aa17.03■□□□□ 0.32
NFKB1-201ENST00000226574 PDE3AQ14432 1141 aa17.03■□□□□ 0.32
NFKB1-201ENST00000226574 DUSP27Q5VZP5 1158 aa17.03■□□□□ 0.32
NFKB1-201ENST00000226574 IGHDP01880 384 aa17.03■□□□□ 0.32
NFKB1-201ENST00000226574 KIAA2012Q0VF49 1180 aa17.02■□□□□ 0.32
NFKB1-201ENST00000226574 WWC1Q8IX03 1113 aa17.02■□□□□ 0.32
NFKB1-201ENST00000226574 EPRSP07814 1512 aaKnown RBP17.02■□□□□ 0.32
NFKB1-201ENST00000226574 BICRAQ9NZM4 1560 aa17.02■□□□□ 0.32
NFKB1-201ENST00000226574 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.02■□□□□ 0.31
NFKB1-201ENST00000226574 NOB1Q9ULX3 412 aaKnown RBP17.02■□□□□ 0.31
NFKB1-201ENST00000226574 BCL11BQ9C0K0 894 aaPredicted RBP17.01■□□□□ 0.31
NFKB1-201ENST00000226574 EHBP1L1Q8N3D4 1523 aa17■□□□□ 0.31
NFKB1-201ENST00000226574 CCDC9Q9Y3X0 531 aaKnown RBP17■□□□□ 0.31
NFKB1-201ENST00000226574 VGFO15240 615 aaPredicted RBP17■□□□□ 0.31
NFKB1-201ENST00000226574 EFCAB5A4FU69 1503 aa17■□□□□ 0.31
NFKB1-201ENST00000226574 HMMRO75330 724 aa16.99■□□□□ 0.31
NFKB1-201ENST00000226574 PRKCSHP14314 528 aaPredicted RBP16.99■□□□□ 0.31
NFKB1-201ENST00000226574 FAM43AQ8N2R8 423 aa16.99■□□□□ 0.31
NFKB1-201ENST00000226574 THUMPD2Q9BTF0 503 aaKnown RBP16.99■□□□□ 0.31
NFKB1-201ENST00000226574 HAP1P54257 671 aaPredicted RBP16.98■□□□□ 0.31
NFKB1-201ENST00000226574 ERBINQ96RT1 1412 aa16.98■□□□□ 0.31
NFKB1-201ENST00000226574 CHAF1AQ13111 956 aaPredicted RBP16.98■□□□□ 0.31
NFKB1-201ENST00000226574 ANO2Q9NQ90 1003 aa16.98■□□□□ 0.31
NFKB1-201ENST00000226574 RPRD2Q5VT52 1461 aaKnown RBP16.98■□□□□ 0.31
NFKB1-201ENST00000226574 ZNF428Q96B54 188 aa16.97■□□□□ 0.31
NFKB1-201ENST00000226574 CAVIN1Q6NZI2 390 aaKnown RBP16.97■□□□□ 0.31
NFKB1-201ENST00000226574 PRKAR2BP31323 418 aa16.97■□□□□ 0.31
NFKB1-201ENST00000226574 MCM4P33991 863 aa16.97■□□□□ 0.31
NFKB1-201ENST00000226574 TROQ12816 1431 aaPredicted RBP16.97■□□□□ 0.31
NFKB1-201ENST00000226574 PTPN23Q9H3S7 1636 aa16.96■□□□□ 0.31
NFKB1-201ENST00000226574 AMPHP49418 695 aa16.96■□□□□ 0.3
NFKB1-201ENST00000226574 TNNQ9UQP3 1299 aa16.96■□□□□ 0.3
NFKB1-201ENST00000226574 MRE11P49959 708 aa16.95■□□□□ 0.3
NFKB1-201ENST00000226574 NGDNQ8NEJ9 315 aaKnown RBP16.94■□□□□ 0.3
NFKB1-201ENST00000226574 EIF2S2P20042 333 aaKnown RBP16.94■□□□□ 0.3
NFKB1-201ENST00000226574 NGEFQ8N5V2 710 aa16.94■□□□□ 0.3
NFKB1-201ENST00000226574 ZNF330Q9Y3S2 320 aaPredicted RBP16.94■□□□□ 0.3
NFKB1-201ENST00000226574 NASPP49321 788 aaPredicted RBP16.94■□□□□ 0.3
NFKB1-201ENST00000226574 DISP3Q9P2K9 1392 aa16.93■□□□□ 0.3
NFKB1-201ENST00000226574 PTMSP20962 102 aa16.93■□□□□ 0.3
NFKB1-201ENST00000226574 SKOR2Q2VWA4 1001 aaPredicted RBP16.93■□□□□ 0.3
NFKB1-201ENST00000226574 TBC1D2Q9BYX2 928 aa16.93■□□□□ 0.3
NFKB1-201ENST00000226574 MAP3K1Q13233 1512 aa16.93■□□□□ 0.3
NFKB1-201ENST00000226574 COG3Q96JB2 828 aa16.93■□□□□ 0.3
NFKB1-201ENST00000226574 R3HCC1Q9Y3T6 440 aaKnown RBP16.93■□□□□ 0.3
NFKB1-201ENST00000226574 RBM10P98175 930 aaKnown RBP16.93■□□□□ 0.3
NFKB1-201ENST00000226574 MVPQ14764 893 aaKnown RBP16.93■□□□□ 0.3
NFKB1-201ENST00000226574 SUPT6HQ7KZ85 1726 aaKnown RBP16.93■□□□□ 0.3
NFKB1-201ENST00000226574 RARSP54136 660 aaKnown RBP16.92■□□□□ 0.3
NFKB1-201ENST00000226574 KIF16BQ96L93 1317 aa16.92■□□□□ 0.3
NFKB1-201ENST00000226574 SYAP1Q96A49 352 aaPredicted RBP16.92■□□□□ 0.3
NFKB1-201ENST00000226574 SEC24BO95487 1268 aa16.92■□□□□ 0.3
NFKB1-201ENST00000226574 CFAP44Q96MT7 982 aa16.92■□□□□ 0.3
NFKB1-201ENST00000226574 PLB1Q6P1J6 1458 aa16.92■□□□□ 0.3
NFKB1-201ENST00000226574 PRPF40AO75400 957 aaKnown RBP16.91■□□□□ 0.3
NFKB1-201ENST00000226574 ATF7IPQ6VMQ6 1270 aa16.91■□□□□ 0.3
NFKB1-201ENST00000226574 TMEM57Q8N5G2 664 aa16.91■□□□□ 0.3
NFKB1-201ENST00000226574 LMOD3Q0VAK6 560 aa16.9■□□□□ 0.3
NFKB1-201ENST00000226574 SPINK5Q9NQ38 1064 aaPredicted RBP16.9■□□□□ 0.3
NFKB1-201ENST00000226574 FKBP5Q13451 457 aaPredicted RBP16.9■□□□□ 0.3
NFKB1-201ENST00000226574 GRIN2BQ13224 1484 aa16.9■□□□□ 0.3
NFKB1-201ENST00000226574 ROCK1Q13464 1354 aa16.9■□□□□ 0.3
NFKB1-201ENST00000226574 FBLN1P23142 703 aa16.9■□□□□ 0.3
NFKB1-201ENST00000226574 SSH1Q8WYL5 1049 aa16.9■□□□□ 0.3
NFKB1-201ENST00000226574 PCDHB15Q9Y5E8 787 aa16.89■□□□□ 0.29
NFKB1-201ENST00000226574 NEK4P51957 841 aa16.89■□□□□ 0.29
NFKB1-201ENST00000226574 ARHGEF11O15085 1522 aa16.88■□□□□ 0.29
NFKB1-201ENST00000226574 NUTM2GQ5VZR2 741 aa16.88■□□□□ 0.29
NFKB1-201ENST00000226574 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.88■□□□□ 0.29
NFKB1-201ENST00000226574 API5Q9BZZ5 524 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms