RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 DMRT2Q9Y5R5 561 aa16.21■□□□□ 0.19
NUP88-201ENST00000225696 IQGAP3Q86VI3 1631 aa16.2■□□□□ 0.18
NUP88-201ENST00000225696 BCAR3O75815 825 aa16.2■□□□□ 0.18
NUP88-201ENST00000225696 SLFN5Q08AF3 891 aa16.2■□□□□ 0.18
NUP88-201ENST00000225696 FAM161AQ3B820 660 aa16.2■□□□□ 0.18
NUP88-201ENST00000225696 GSE1Q14687 1217 aa16.2■□□□□ 0.18
NUP88-201ENST00000225696 EIF2AK4Q9P2K8 1649 aaKnown RBP16.19■□□□□ 0.18
NUP88-201ENST00000225696 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
NUP88-201ENST00000225696 FRAT1Q92837 279 aaPredicted RBP16.19■□□□□ 0.18
NUP88-201ENST00000225696 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.18■□□□□ 0.18
NUP88-201ENST00000225696 RNF17Q9BXT8 1623 aaKnown RBP16.18■□□□□ 0.18
NUP88-201ENST00000225696 APAF1O14727 1248 aa16.18■□□□□ 0.18
NUP88-201ENST00000225696 ATP10AO60312 1499 aa16.17■□□□□ 0.18
NUP88-201ENST00000225696 MAST1Q9Y2H9 1570 aa16.17■□□□□ 0.18
NUP88-201ENST00000225696 TRMT2AQ8IZ69 625 aaKnown RBP16.17■□□□□ 0.18
NUP88-201ENST00000225696 FRAT2O75474 233 aaPredicted RBP16.16■□□□□ 0.18
NUP88-201ENST00000225696 IGHDP01880 384 aa16.16■□□□□ 0.18
NUP88-201ENST00000225696 MADDQ8WXG6 1647 aa16.13■□□□□ 0.17
NUP88-201ENST00000225696 DAXXQ9UER7 740 aaPredicted RBP16.13■□□□□ 0.17
NUP88-201ENST00000225696 PLXNC1O60486 1568 aa16.13■□□□□ 0.17
NUP88-201ENST00000225696 UHRF1BP1LA0JNW5 1464 aa16.13■□□□□ 0.17
NUP88-201ENST00000225696 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.13■□□□□ 0.17
NUP88-201ENST00000225696 IQGAP1P46940 1657 aa16.12■□□□□ 0.17
NUP88-201ENST00000225696 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.12■□□□□ 0.17
NUP88-201ENST00000225696 ASXL1Q8IXJ9 1541 aa16.12■□□□□ 0.17
NUP88-201ENST00000225696 DUOX2Q9NRD8 1548 aa16.12■□□□□ 0.17
NUP88-201ENST00000225696 SEC24BO95487 1268 aa16.11■□□□□ 0.17
NUP88-201ENST00000225696 USP19O94966 1318 aa16.11■□□□□ 0.17
NUP88-201ENST00000225696 PIK3C2GO75747 1445 aa16.11■□□□□ 0.17
NUP88-201ENST00000225696 ABCC2Q92887 1545 aa16.1■□□□□ 0.17
NUP88-201ENST00000225696 CARD14Q9BXL6 1004 aa16.1■□□□□ 0.17
NUP88-201ENST00000225696 ERCC6L2Q5T890 1561 aa16.1■□□□□ 0.17
NUP88-201ENST00000225696 MYOM1P52179 1685 aa16.1■□□□□ 0.17
NUP88-201ENST00000225696 NKTRP30414 1462 aaKnown RBP16.09■□□□□ 0.17
NUP88-201ENST00000225696 SYNMO15061 1565 aa16.09■□□□□ 0.17
NUP88-201ENST00000225696 SCAF11Q99590 1463 aaKnown RBP16.09■□□□□ 0.17
NUP88-201ENST00000225696 TRAPPC8Q9Y2L5 1435 aa16.09■□□□□ 0.17
NUP88-201ENST00000225696 PANK1Q8TE04 598 aa16.09■□□□□ 0.17
NUP88-201ENST00000225696 EIF3AQ14152 1382 aaKnown RBP16.08■□□□□ 0.16
NUP88-201ENST00000225696 PRKCSHP14314 528 aaPredicted RBP16.07■□□□□ 0.16
NUP88-201ENST00000225696 AFAP1Q8N556 730 aa16.06■□□□□ 0.16
NUP88-201ENST00000225696 COG6Q9Y2V7 657 aa16.06■□□□□ 0.16
NUP88-201ENST00000225696 CDCA8Q53HL2 280 aa16.06■□□□□ 0.16
NUP88-201ENST00000225696 E9PSI1 815 aa16.05■□□□□ 0.16
NUP88-201ENST00000225696 CFAP70Q5T0N1 1121 aa16.05■□□□□ 0.16
NUP88-201ENST00000225696 TNNQ9UQP3 1299 aa16.04■□□□□ 0.16
NUP88-201ENST00000225696 NPC1L1Q9UHC9 1359 aa16.04■□□□□ 0.16
NUP88-201ENST00000225696 SCAPERQ9BY12 1400 aa16.03■□□□□ 0.16
NUP88-201ENST00000225696 CLTCL1P53675 1640 aa16.03■□□□□ 0.16
NUP88-201ENST00000225696 SPHKAPQ2M3C7 1700 aa16.03■□□□□ 0.16
NUP88-201ENST00000225696 NEUROD2Q15784 382 aa16.03■□□□□ 0.16
NUP88-201ENST00000225696 RRP7AQ9Y3A4 280 aaKnown RBP16.03■□□□□ 0.16
NUP88-201ENST00000225696 WWC1Q8IX03 1113 aa16.02■□□□□ 0.16
NUP88-201ENST00000225696 PLCH2O75038 1416 aa16.02■□□□□ 0.15
NUP88-201ENST00000225696 TRPM2O94759 1503 aa16.02■□□□□ 0.15
NUP88-201ENST00000225696 CLUAP1Q96AJ1 413 aa16.02■□□□□ 0.15
NUP88-201ENST00000225696 TNNT2P45379 298 aaPredicted RBP16.01■□□□□ 0.15
NUP88-201ENST00000225696 EFCAB2Q5VUJ9 269 aa16.01■□□□□ 0.15
NUP88-201ENST00000225696 ADGRF5Q8IZF2 1346 aa16.01■□□□□ 0.15
NUP88-201ENST00000225696 PTPRTO14522 1441 aa16.01■□□□□ 0.15
NUP88-201ENST00000225696 ERVK-7P63135 1459 aa16.01■□□□□ 0.15
NUP88-201ENST00000225696 CENPJQ9HC77 1338 aaPredicted RBP16■□□□□ 0.15
NUP88-201ENST00000225696 RLBP1P12271 317 aa16■□□□□ 0.15
NUP88-201ENST00000225696 POGKQ9P215 609 aa15.99■□□□□ 0.15
NUP88-201ENST00000225696 UGGT1Q9NYU2 1555 aa15.99■□□□□ 0.15
NUP88-201ENST00000225696 SPAG9O60271 1321 aaKnown RBP15.99■□□□□ 0.15
NUP88-201ENST00000225696 PDE3AQ14432 1141 aa15.99■□□□□ 0.15
NUP88-201ENST00000225696 BCL2L13Q9BXK5 485 aa15.99■□□□□ 0.15
NUP88-201ENST00000225696 SLKQ9H2G2 1235 aaPredicted RBP15.99■□□□□ 0.15
NUP88-201ENST00000225696 CEP152O94986 1710 aa15.98■□□□□ 0.15
NUP88-201ENST00000225696 CGNL1Q0VF96 1302 aa15.98■□□□□ 0.15
NUP88-201ENST00000225696 CANXP27824 592 aaKnown RBP15.98■□□□□ 0.15
NUP88-201ENST00000225696 PCDHB15Q9Y5E8 787 aa15.98■□□□□ 0.15
NUP88-201ENST00000225696 ABCC1P33527 1531 aa15.98■□□□□ 0.15
NUP88-201ENST00000225696 NLRP1Q9C000 1473 aa15.98■□□□□ 0.15
NUP88-201ENST00000225696 KDM5AP29375 1690 aaKnown RBP15.97■□□□□ 0.15
NUP88-201ENST00000225696 RARSP54136 660 aaKnown RBP15.95■□□□□ 0.14
NUP88-201ENST00000225696 VIRMAQ69YN4 1812 aaKnown RBP15.95■□□□□ 0.14
NUP88-201ENST00000225696 ZCCHC11Q5TAX3 1644 aaKnown RBP15.95■□□□□ 0.14
NUP88-201ENST00000225696 KIF3BO15066 747 aa15.93■□□□□ 0.14
NUP88-201ENST00000225696 TCP11L2Q8N4U5 519 aa15.93■□□□□ 0.14
NUP88-201ENST00000225696 SLC12A5Q9H2X9 1139 aa15.93■□□□□ 0.14
NUP88-201ENST00000225696 MAPK8IP3Q9UPT6 1336 aa15.92■□□□□ 0.14
NUP88-201ENST00000225696 ZFYVE16Q7Z3T8 1539 aa15.92■□□□□ 0.14
NUP88-201ENST00000225696 ANTXR1Q9H6X2 564 aa15.92■□□□□ 0.14
NUP88-201ENST00000225696 POLR3AO14802 1390 aaPredicted RBP15.92■□□□□ 0.14
NUP88-201ENST00000225696 ABCA6Q8N139 1617 aa15.92■□□□□ 0.14
NUP88-201ENST00000225696 STAC3Q96MF2 364 aa15.92■□□□□ 0.14
NUP88-201ENST00000225696 PDZRN3Q9UPQ7 1066 aa15.91■□□□□ 0.14
NUP88-201ENST00000225696 SHPRHQ149N8 1683 aa15.9■□□□□ 0.14
NUP88-201ENST00000225696 MORC1Q86VD1 984 aa15.9■□□□□ 0.14
NUP88-201ENST00000225696 NSD3Q9BZ95 1437 aa15.9■□□□□ 0.14
NUP88-201ENST00000225696 SPRYD3Q8NCJ5 442 aa15.89■□□□□ 0.13
NUP88-201ENST00000225696 MAP3K4Q9Y6R4 1608 aa15.89■□□□□ 0.13
NUP88-201ENST00000225696 RUNDC1Q96C34 613 aa15.89■□□□□ 0.13
NUP88-201ENST00000225696 PHF23Q9BUL5 403 aaPredicted RBP15.89■□□□□ 0.13
NUP88-201ENST00000225696 TBC1D2Q9BYX2 928 aa15.89■□□□□ 0.13
NUP88-201ENST00000225696 TRAK1Q9UPV9 953 aa15.89■□□□□ 0.13
NUP88-201ENST00000225696 DEPDC5O75140 1603 aa15.88■□□□□ 0.13
NUP88-201ENST00000225696 TET3O43151 1660 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms