RNA–Protein interactions for RNA: ENST00000218388.8

TIMP1-201, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP1, Length 892 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-201ENST00000218388 ARHGAP23Q9P227 1491 aa19.03■□□□□ 0.64
TIMP1-201ENST00000218388 RIMS2Q9UQ26 1411 aa19.02■□□□□ 0.64
TIMP1-201ENST00000218388 PPLO60437 1756 aa19.02■□□□□ 0.64
TIMP1-201ENST00000218388 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.02■□□□□ 0.64
TIMP1-201ENST00000218388 EID1Q9Y6B2 187 aa19.02■□□□□ 0.64
TIMP1-201ENST00000218388 NEXMIFQ5QGS0 1516 aa19.01■□□□□ 0.63
TIMP1-201ENST00000218388 IFT172Q9UG01 1749 aa19.01■□□□□ 0.63
TIMP1-201ENST00000218388 STAC3Q96MF2 364 aa19■□□□□ 0.63
TIMP1-201ENST00000218388 ZFYVE9O95405 1425 aa19■□□□□ 0.63
TIMP1-201ENST00000218388 PPP1R15AO75807 674 aaPredicted RBP18.99■□□□□ 0.63
TIMP1-201ENST00000218388 ANKLE2Q86XL3 938 aa18.99■□□□□ 0.63
TIMP1-201ENST00000218388 TIMELESSQ9UNS1 1208 aa18.99■□□□□ 0.63
TIMP1-201ENST00000218388 POLR1AO95602 1720 aaPredicted RBP18.99■□□□□ 0.63
TIMP1-201ENST00000218388 SCAF11Q99590 1463 aaKnown RBP18.98■□□□□ 0.63
TIMP1-201ENST00000218388 VGFO15240 615 aaPredicted RBP18.98■□□□□ 0.63
TIMP1-201ENST00000218388 HSPA2P54652 639 aa18.97■□□□□ 0.63
TIMP1-201ENST00000218388 TXNDC2Q86VQ3 553 aa18.97■□□□□ 0.63
TIMP1-201ENST00000218388 MYOM2P54296 1465 aa18.97■□□□□ 0.63
TIMP1-201ENST00000218388 DCAF11Q8TEB1 546 aa18.95■□□□□ 0.62
TIMP1-201ENST00000218388 L3MBTL2Q969R5 705 aa18.95■□□□□ 0.62
TIMP1-201ENST00000218388 LTKP29376 864 aa18.92■□□□□ 0.62
TIMP1-201ENST00000218388 NUTM2DQ5VT03 806 aaPredicted RBP18.92■□□□□ 0.62
TIMP1-201ENST00000218388 KDM2AQ9Y2K7 1162 aa18.92■□□□□ 0.62
TIMP1-201ENST00000218388 PLEKHG1Q9ULL1 1385 aa18.92■□□□□ 0.62
TIMP1-201ENST00000218388 MED14O60244 1454 aa18.9■□□□□ 0.62
TIMP1-201ENST00000218388 IQGAP1P46940 1657 aa18.9■□□□□ 0.62
TIMP1-201ENST00000218388 BCANQ96GW7 911 aa18.9■□□□□ 0.62
TIMP1-201ENST00000218388 NPHP4O75161 1426 aaPredicted RBP18.9■□□□□ 0.62
TIMP1-201ENST00000218388 STRCQ7RTU9 1775 aa18.89■□□□□ 0.61
TIMP1-201ENST00000218388 NCKAP5LQ9HCH0 1330 aa18.89■□□□□ 0.61
TIMP1-201ENST00000218388 NRXN1Q9ULB1 1477 aa18.89■□□□□ 0.61
TIMP1-201ENST00000218388 SETBP1Q9Y6X0 1596 aa18.89■□□□□ 0.61
TIMP1-201ENST00000218388 ADGRF5Q8IZF2 1346 aa18.88■□□□□ 0.61
TIMP1-201ENST00000218388 PIK3C2GO75747 1445 aa18.88■□□□□ 0.61
TIMP1-201ENST00000218388 LAMC1P11047 1609 aa18.87■□□□□ 0.61
TIMP1-201ENST00000218388 DIP2AQ14689 1571 aa18.87■□□□□ 0.61
TIMP1-201ENST00000218388 PRAG1Q86YV5 1406 aa18.86■□□□□ 0.61
TIMP1-201ENST00000218388 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
TIMP1-201ENST00000218388 ZEB1P37275 1124 aaPredicted RBP18.84■□□□□ 0.61
TIMP1-201ENST00000218388 NRXN3Q9Y4C0 1643 aa18.84■□□□□ 0.61
TIMP1-201ENST00000218388 KIAA1210Q9ULL0 1709 aa18.83■□□□□ 0.61
TIMP1-201ENST00000218388 ALKQ9UM73 1620 aa18.82■□□□□ 0.6
TIMP1-201ENST00000218388 ADAMTS13Q76LX8 1427 aa18.81■□□□□ 0.6
TIMP1-201ENST00000218388 C14orf93Q9H972 538 aaKnown RBP18.8■□□□□ 0.6
TIMP1-201ENST00000218388 TBX22Q9Y458 520 aa18.8■□□□□ 0.6
TIMP1-201ENST00000218388 TRPM1Q7Z4N2 1603 aa18.79■□□□□ 0.6
TIMP1-201ENST00000218388 SETD1AO15047 1707 aaKnown RBP18.79■□□□□ 0.6
TIMP1-201ENST00000218388 SLC26A8Q96RN1 970 aa18.78■□□□□ 0.6
TIMP1-201ENST00000218388 CFAP70Q5T0N1 1121 aa18.77■□□□□ 0.6
TIMP1-201ENST00000218388 PIK3R4Q99570 1358 aa18.77■□□□□ 0.6
TIMP1-201ENST00000218388 RALGAPBQ86X10 1494 aa18.77■□□□□ 0.59
TIMP1-201ENST00000218388 NBPF8Q3BBV2 869 aa18.76■□□□□ 0.59
TIMP1-201ENST00000218388 ROCK2O75116 1388 aaKnown RBP18.75■□□□□ 0.59
TIMP1-201ENST00000218388 METP08581 1390 aa18.72■□□□□ 0.59
TIMP1-201ENST00000218388 ASXL1Q8IXJ9 1541 aa18.72■□□□□ 0.59
TIMP1-201ENST00000218388 CHD2O14647 1828 aaKnown RBP18.72■□□□□ 0.59
TIMP1-201ENST00000218388 ADGRB1O14514 1584 aa18.72■□□□□ 0.59
TIMP1-201ENST00000218388 NWD1Q149M9 1564 aa18.7■□□□□ 0.58
TIMP1-201ENST00000218388 TMEM132EQ6IEE7 984 aa18.7■□□□□ 0.58
TIMP1-201ENST00000218388 GPRASP1Q5JY77 1395 aa18.69■□□□□ 0.58
TIMP1-201ENST00000218388 YTHDC2Q9H6S0 1430 aaKnown RBP18.69■□□□□ 0.58
TIMP1-201ENST00000218388 NBPF1Q3BBV0 1214 aa18.69■□□□□ 0.58
TIMP1-201ENST00000218388 KNDC1Q76NI1 1749 aa18.69■□□□□ 0.58
TIMP1-201ENST00000218388 LRPPRCP42704 1394 aaKnown RBP18.68■□□□□ 0.58
TIMP1-201ENST00000218388 KCNA6P17658 529 aa18.68■□□□□ 0.58
TIMP1-201ENST00000218388 CARD11Q9BXL7 1154 aa18.68■□□□□ 0.58
TIMP1-201ENST00000218388 XRN1Q8IZH2 1706 aaKnown RBP18.68■□□□□ 0.58
TIMP1-201ENST00000218388 NKTRP30414 1462 aaKnown RBP18.66■□□□□ 0.58
TIMP1-201ENST00000218388 AMOTL2Q9Y2J4 779 aa18.66■□□□□ 0.58
TIMP1-201ENST00000218388 ABCC11Q96J66 1382 aa18.66■□□□□ 0.58
TIMP1-201ENST00000218388 PTPRUQ92729 1446 aa18.66■□□□□ 0.58
TIMP1-201ENST00000218388 STK26Q9P289 416 aa18.65■□□□□ 0.58
TIMP1-201ENST00000218388 EIF3AQ14152 1382 aaKnown RBP18.65■□□□□ 0.58
TIMP1-201ENST00000218388 TECPR2O15040 1411 aa18.65■□□□□ 0.58
TIMP1-201ENST00000218388 PTCH1Q13635 1447 aa18.65■□□□□ 0.58
TIMP1-201ENST00000218388 CPS1P31327 1500 aa18.64■□□□□ 0.58
TIMP1-201ENST00000218388 DLC1Q96QB1 1528 aa18.64■□□□□ 0.58
TIMP1-201ENST00000218388 TRAK1Q9UPV9 953 aa18.63■□□□□ 0.57
TIMP1-201ENST00000218388 ZNF335Q9H4Z2 1342 aaPredicted RBP18.63■□□□□ 0.57
TIMP1-201ENST00000218388 ARHGEF28Q8N1W1 1705 aaKnown RBP18.63■□□□□ 0.57
TIMP1-201ENST00000218388 STRCP1A6NGW2 1772 aa18.62■□□□□ 0.57
TIMP1-201ENST00000218388 FAM135BQ49AJ0 1406 aa18.61■□□□□ 0.57
TIMP1-201ENST00000218388 SIRT1Q96EB6 747 aa18.61■□□□□ 0.57
TIMP1-201ENST00000218388 POGKQ9P215 609 aa18.59■□□□□ 0.57
TIMP1-201ENST00000218388 USP47Q96K76 1375 aa18.58■□□□□ 0.57
TIMP1-201ENST00000218388 ROBO2Q9HCK4 1378 aa18.58■□□□□ 0.57
TIMP1-201ENST00000218388 PROSER2Q86WR7 435 aaPredicted RBP18.58■□□□□ 0.56
TIMP1-201ENST00000218388 PRAM1Q96QH2 718 aa18.56■□□□□ 0.56
TIMP1-201ENST00000218388 NCOA3Q9Y6Q9 1424 aa18.56■□□□□ 0.56
TIMP1-201ENST00000218388 LTBP4Q8N2S1 1624 aa18.56■□□□□ 0.56
TIMP1-201ENST00000218388 CENPJQ9HC77 1338 aaPredicted RBP18.55■□□□□ 0.56
TIMP1-201ENST00000218388 EIF4G2P78344 907 aaKnown RBP eCLIP18.55■□□□□ 0.56
TIMP1-201ENST00000218388 QRICH2Q9H0J4 1663 aa18.54■□□□□ 0.56
TIMP1-201ENST00000218388 LRRC7Q96NW7 1537 aa18.54■□□□□ 0.56
TIMP1-201ENST00000218388 WAPLQ7Z5K2 1190 aa18.53■□□□□ 0.56
TIMP1-201ENST00000218388 C14orf37Q86TY3 774 aa18.53■□□□□ 0.56
TIMP1-201ENST00000218388 TMEM94Q12767 1356 aa18.53■□□□□ 0.56
TIMP1-201ENST00000218388 SLC24A1O60721 1099 aa18.52■□□□□ 0.56
TIMP1-201ENST00000218388 PLEKHH1Q9ULM0 1364 aa18.52■□□□□ 0.55
TIMP1-201ENST00000218388 SAFB2Q14151 953 aaKnown RBP eCLIP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms