RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 PPP6R1Q9UPN7 881 aa23.92■■□□□ 1.42
VRK1-201ENST00000216639 CFAP65Q6ZU64 1925 aaKnown RBP23.91■■□□□ 1.42
VRK1-201ENST00000216639 EIF3AQ14152 1382 aaKnown RBP23.91■■□□□ 1.42
VRK1-201ENST00000216639 TESK2Q96S53 571 aa23.9■■□□□ 1.42
VRK1-201ENST00000216639 SIGLEC1Q9BZZ2 1709 aa23.9■■□□□ 1.42
VRK1-201ENST00000216639 NRXN1Q9ULB1 1477 aa23.9■■□□□ 1.42
VRK1-201ENST00000216639 PIK3C2BO00750 1634 aa23.89■■□□□ 1.42
VRK1-201ENST00000216639 ADGRF5Q8IZF2 1346 aa23.87■■□□□ 1.41
VRK1-201ENST00000216639 SYNMO15061 1565 aa23.87■■□□□ 1.41
VRK1-201ENST00000216639 SLC52A1Q9NWF4 448 aa23.87■■□□□ 1.41
VRK1-201ENST00000216639 PPLO60437 1756 aa23.86■■□□□ 1.41
VRK1-201ENST00000216639 ARHGEF40Q8TER5 1519 aa23.85■■□□□ 1.41
VRK1-201ENST00000216639 SLC24A1O60721 1099 aa23.84■■□□□ 1.41
VRK1-201ENST00000216639 DISP3Q9P2K9 1392 aa23.84■■□□□ 1.41
VRK1-201ENST00000216639 KTN1Q86UP2 1357 aaKnown RBP23.83■■□□□ 1.41
VRK1-201ENST00000216639 CDCA8Q53HL2 280 aa23.83■■□□□ 1.41
VRK1-201ENST00000216639 CFAP70Q5T0N1 1121 aa23.83■■□□□ 1.41
VRK1-201ENST00000216639 PREX1Q8TCU6 1659 aa23.83■■□□□ 1.4
VRK1-201ENST00000216639 MRS2Q9HD23 443 aa23.82■■□□□ 1.4
VRK1-201ENST00000216639 SETBP1Q9Y6X0 1596 aa23.81■■□□□ 1.4
VRK1-201ENST00000216639 PIK3C2GO75747 1445 aa23.79■■□□□ 1.4
VRK1-201ENST00000216639 VGFO15240 615 aaPredicted RBP23.78■■□□□ 1.4
VRK1-201ENST00000216639 IDI1Q13907 227 aa23.78■■□□□ 1.4
VRK1-201ENST00000216639 RALBP1Q15311 655 aa23.76■■□□□ 1.39
VRK1-201ENST00000216639 C14orf93Q9H972 538 aaKnown RBP23.76■■□□□ 1.39
VRK1-201ENST00000216639 ERVK-7P63135 1459 aa23.75■■□□□ 1.39
VRK1-201ENST00000216639 CCDC184Q52MB2 194 aa23.75■■□□□ 1.39
VRK1-201ENST00000216639 CLTCQ00610 1675 aaKnown RBP23.74■■□□□ 1.39
VRK1-201ENST00000216639 NEXMIFQ5QGS0 1516 aa23.74■■□□□ 1.39
VRK1-201ENST00000216639 HNRNPUQ00839 825 aaKnown RBP eCLIP23.72■■□□□ 1.39
VRK1-201ENST00000216639 ZFYVE9O95405 1425 aa23.72■■□□□ 1.39
VRK1-201ENST00000216639 CNGB1Q14028 1251 aaPredicted RBP23.71■■□□□ 1.39
VRK1-201ENST00000216639 ESF1Q9H501 851 aaKnown RBP23.7■■□□□ 1.39
VRK1-201ENST00000216639 TMEM131LA2VDJ0 1609 aa23.7■■□□□ 1.38
VRK1-201ENST00000216639 MYO3AQ8NEV4 1616 aa23.7■■□□□ 1.38
VRK1-201ENST00000216639 FAM9BQ8IZU0 186 aa23.69■■□□□ 1.38
VRK1-201ENST00000216639 PANK3Q9H999 370 aa23.69■■□□□ 1.38
VRK1-201ENST00000216639 MYBBP1AQ9BQG0 1328 aaKnown RBP23.68■■□□□ 1.38
VRK1-201ENST00000216639 PER1O15534 1290 aaPredicted RBP23.68■■□□□ 1.38
VRK1-201ENST00000216639 MLECQ14165 292 aa23.68■■□□□ 1.38
VRK1-201ENST00000216639 FBXO31Q5XUX0 539 aaPredicted RBP23.68■■□□□ 1.38
VRK1-201ENST00000216639 SBNO2Q9Y2G9 1366 aa23.68■■□□□ 1.38
VRK1-201ENST00000216639 ADGRB1O14514 1584 aa23.67■■□□□ 1.38
VRK1-201ENST00000216639 SPATA31D1Q6ZQQ2 1576 aa23.66■■□□□ 1.38
VRK1-201ENST00000216639 KDM5AP29375 1690 aaKnown RBP23.66■■□□□ 1.38
VRK1-201ENST00000216639 CENPJQ9HC77 1338 aaPredicted RBP23.65■■□□□ 1.38
VRK1-201ENST00000216639 BRD4O60885 1362 aaPredicted RBP23.65■■□□□ 1.38
VRK1-201ENST00000216639 PARD3Q8TEW0 1356 aa23.65■■□□□ 1.38
VRK1-201ENST00000216639 TMC1Q8TDI8 760 aa23.64■■□□□ 1.38
VRK1-201ENST00000216639 STAG3Q9UJ98 1225 aa23.64■■□□□ 1.38
VRK1-201ENST00000216639 MYO5BQ9ULV0 1848 aa23.63■■□□□ 1.37
VRK1-201ENST00000216639 NUTM2DQ5VT03 806 aaPredicted RBP23.62■■□□□ 1.37
VRK1-201ENST00000216639 TRAK1Q9UPV9 953 aa23.62■■□□□ 1.37
VRK1-201ENST00000216639 NLRP13Q86W25 1043 aa23.59■■□□□ 1.37
VRK1-201ENST00000216639 KNSTRNQ9Y448 316 aa23.59■■□□□ 1.37
VRK1-201ENST00000216639 TMEM132EQ6IEE7 984 aa23.59■■□□□ 1.37
VRK1-201ENST00000216639 ZMYM3Q14202 1370 aa23.58■■□□□ 1.37
VRK1-201ENST00000216639 QRICH2Q9H0J4 1663 aa23.57■■□□□ 1.36
VRK1-201ENST00000216639 MYOM1P52179 1685 aa23.56■■□□□ 1.36
VRK1-201ENST00000216639 CC2D1BQ5T0F9 858 aaKnown RBP23.55■■□□□ 1.36
VRK1-201ENST00000216639 PNISRQ8TF01 805 aaKnown RBP23.55■■□□□ 1.36
VRK1-201ENST00000216639 ZBED9Q6R2W3 1325 aa23.54■■□□□ 1.36
VRK1-201ENST00000216639 A2ML1A8K2U0 1454 aa23.54■■□□□ 1.36
VRK1-201ENST00000216639 TRHP20396 242 aaPredicted RBP23.52■■□□□ 1.36
VRK1-201ENST00000216639 ARHGEF28Q8N1W1 1705 aaKnown RBP23.52■■□□□ 1.36
VRK1-201ENST00000216639 ASXL1Q8IXJ9 1541 aa23.51■■□□□ 1.35
VRK1-201ENST00000216639 NPC1L1Q9UHC9 1359 aa23.5■■□□□ 1.35
VRK1-201ENST00000216639 PUS7Q96PZ0 661 aaKnown RBP23.49■■□□□ 1.35
VRK1-201ENST00000216639 RIMS2Q9UQ26 1411 aa23.48■■□□□ 1.35
VRK1-201ENST00000216639 LRPPRCP42704 1394 aaKnown RBP23.47■■□□□ 1.35
VRK1-201ENST00000216639 TNRQ92752 1358 aa23.47■■□□□ 1.35
VRK1-201ENST00000216639 EVC2Q86UK5 1308 aa23.47■■□□□ 1.35
VRK1-201ENST00000216639 AMER1Q5JTC6 1135 aaPredicted RBP23.47■■□□□ 1.35
VRK1-201ENST00000216639 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.47■■□□□ 1.35
VRK1-201ENST00000216639 ALKQ9UM73 1620 aa23.46■■□□□ 1.35
VRK1-201ENST00000216639 NEFLP07196 543 aa23.46■■□□□ 1.35
VRK1-201ENST00000216639 HDGFP51858 240 aaKnown RBP23.46■■□□□ 1.35
VRK1-201ENST00000216639 YTHDC2Q9H6S0 1430 aaKnown RBP23.44■■□□□ 1.34
VRK1-201ENST00000216639 SUPT16HQ9Y5B9 1047 aaKnown RBP23.43■■□□□ 1.34
VRK1-201ENST00000216639 STK26Q9P289 416 aa23.42■■□□□ 1.34
VRK1-201ENST00000216639 PTPRMP28827 1452 aa23.39■■□□□ 1.33
VRK1-201ENST00000216639 INSRP06213 1382 aa23.39■■□□□ 1.33
VRK1-201ENST00000216639 TULP4Q9NRJ4 1543 aa23.38■■□□□ 1.33
VRK1-201ENST00000216639 SENP3Q9H4L4 574 aaPredicted RBP23.38■■□□□ 1.33
VRK1-201ENST00000216639 POGKQ9P215 609 aa23.38■■□□□ 1.33
VRK1-201ENST00000216639 PPP2R1AP30153 589 aa23.37■■□□□ 1.33
VRK1-201ENST00000216639 NLRP1Q9C000 1473 aa23.36■■□□□ 1.33
VRK1-201ENST00000216639 NINLQ9Y2I6 1382 aa23.35■■□□□ 1.33
VRK1-201ENST00000216639 PRAM1Q96QH2 718 aa23.35■■□□□ 1.33
VRK1-201ENST00000216639 CARD14Q9BXL6 1004 aa23.35■■□□□ 1.33
VRK1-201ENST00000216639 DLC1Q96QB1 1528 aa23.35■■□□□ 1.33
VRK1-201ENST00000216639 FKBP8Q14318 412 aa23.34■■□□□ 1.33
VRK1-201ENST00000216639 UBR1Q8IWV7 1749 aa23.34■■□□□ 1.33
VRK1-201ENST00000216639 SAFB2Q14151 953 aaKnown RBP eCLIP23.33■■□□□ 1.33
VRK1-201ENST00000216639 SLC12A5Q9H2X9 1139 aa23.33■■□□□ 1.33
VRK1-201ENST00000216639 TMEM2Q9UHN6 1383 aa23.32■■□□□ 1.32
VRK1-201ENST00000216639 SETD1AO15047 1707 aaKnown RBP23.32■■□□□ 1.32
VRK1-201ENST00000216639 NSD3Q9BZ95 1437 aa23.32■■□□□ 1.32
VRK1-201ENST00000216639 FER1L4A9Z1Z3 1794 aa23.31■■□□□ 1.32
VRK1-201ENST00000216639 ATAD2Q6PL18 1390 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms