RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 CHGAP10645 457 aaKnown RBP33.81■■■■□ 3
VTI1B-201ENST00000216456 ZFYVE9O95405 1425 aa33.79■■■■□ 3
VTI1B-201ENST00000216456 XIRP1Q702N8 1843 aaKnown RBP33.79■■■■□ 3
VTI1B-201ENST00000216456 BCANQ96GW7 911 aa33.79■■■■□ 3
VTI1B-201ENST00000216456 TMEM131LA2VDJ0 1609 aa33.79■■■■□ 3
VTI1B-201ENST00000216456 NUTM2DQ5VT03 806 aaPredicted RBP33.78■■■■□ 3
VTI1B-201ENST00000216456 RIMS2Q9UQ26 1411 aa33.78■■■■□ 3
VTI1B-201ENST00000216456 RRBP1Q9P2E9 1410 aaKnown RBP33.77■■■■□ 3
VTI1B-201ENST00000216456 KCNA6P17658 529 aa33.74■■■□□ 2.99
VTI1B-201ENST00000216456 TMEM94Q12767 1356 aa33.72■■■□□ 2.99
VTI1B-201ENST00000216456 PPP1R15AO75807 674 aaPredicted RBP33.71■■■□□ 2.99
VTI1B-201ENST00000216456 PROSER2Q86WR7 435 aaPredicted RBP33.68■■■□□ 2.98
VTI1B-201ENST00000216456 PLEKHG1Q9ULL1 1385 aa33.68■■■□□ 2.98
VTI1B-201ENST00000216456 NAIPQ13075 1403 aa33.64■■■□□ 2.98
VTI1B-201ENST00000216456 NWD1Q149M9 1564 aa33.63■■■□□ 2.97
VTI1B-201ENST00000216456 MED1Q15648 1581 aaPredicted RBP33.62■■■□□ 2.97
VTI1B-201ENST00000216456 ADAMTS13Q76LX8 1427 aa33.59■■■□□ 2.97
VTI1B-201ENST00000216456 HDGFP51858 240 aaKnown RBP33.58■■■□□ 2.97
VTI1B-201ENST00000216456 NKTRP30414 1462 aaKnown RBP33.56■■■□□ 2.96
VTI1B-201ENST00000216456 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.56■■■□□ 2.96
VTI1B-201ENST00000216456 SPHKAPQ2M3C7 1700 aa33.54■■■□□ 2.96
VTI1B-201ENST00000216456 TBX22Q9Y458 520 aa33.54■■■□□ 2.96
VTI1B-201ENST00000216456 CHD2O14647 1828 aaKnown RBP33.53■■■□□ 2.96
VTI1B-201ENST00000216456 SOCS7O14512 581 aa33.52■■■□□ 2.96
VTI1B-201ENST00000216456 TRIM52Q96A61 297 aa33.48■■■□□ 2.95
VTI1B-201ENST00000216456 FAM135BQ49AJ0 1406 aa33.47■■■□□ 2.95
VTI1B-201ENST00000216456 CLTCL1P53675 1640 aa33.47■■■□□ 2.95
VTI1B-201ENST00000216456 HFM1A2PYH4 1435 aa33.46■■■□□ 2.95
VTI1B-201ENST00000216456 ZNF326Q5BKZ1 582 aaKnown RBP33.46■■■□□ 2.95
VTI1B-201ENST00000216456 MSH6P52701 1360 aa33.45■■■□□ 2.94
VTI1B-201ENST00000216456 PTPRUQ92729 1446 aa33.45■■■□□ 2.94
VTI1B-201ENST00000216456 ROBO1Q9Y6N7 1651 aa33.43■■■□□ 2.94
VTI1B-201ENST00000216456 NRXN3Q9Y4C0 1643 aa33.41■■■□□ 2.94
VTI1B-201ENST00000216456 DIP2AQ14689 1571 aa33.4■■■□□ 2.94
VTI1B-201ENST00000216456 TRPM2O94759 1503 aa33.4■■■□□ 2.94
VTI1B-201ENST00000216456 AMOTL2Q9Y2J4 779 aa33.39■■■□□ 2.94
VTI1B-201ENST00000216456 SLAIN2Q9P270 581 aa33.38■■■□□ 2.93
VTI1B-201ENST00000216456 C14orf37Q86TY3 774 aa33.37■■■□□ 2.93
VTI1B-201ENST00000216456 FOXD1Q16676 465 aa33.36■■■□□ 2.93
VTI1B-201ENST00000216456 PHF23Q9BUL5 403 aaPredicted RBP33.36■■■□□ 2.93
VTI1B-201ENST00000216456 SLC4A1APQ9BWU0 796 aaKnown RBP33.35■■■□□ 2.93
VTI1B-201ENST00000216456 PIK3R4Q99570 1358 aa33.34■■■□□ 2.93
VTI1B-201ENST00000216456 NEXMIFQ5QGS0 1516 aa33.34■■■□□ 2.93
VTI1B-201ENST00000216456 METP08581 1390 aa33.34■■■□□ 2.93
VTI1B-201ENST00000216456 SETBP1Q9Y6X0 1596 aa33.33■■■□□ 2.93
VTI1B-201ENST00000216456 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.28■■■□□ 2.92
VTI1B-201ENST00000216456 RGS17Q9UGC6 210 aaPredicted RBP33.27■■■□□ 2.92
VTI1B-201ENST00000216456 NCOA3Q9Y6Q9 1424 aa33.27■■■□□ 2.92
VTI1B-201ENST00000216456 XRN1Q8IZH2 1706 aaKnown RBP33.25■■■□□ 2.91
VTI1B-201ENST00000216456 C19orf44Q9H6X5 657 aa33.25■■■□□ 2.91
VTI1B-201ENST00000216456 KIF1BO60333 1816 aa33.25■■■□□ 2.91
VTI1B-201ENST00000216456 ATF3P18847 181 aa33.21■■■□□ 2.91
VTI1B-201ENST00000216456 PHLPP1O60346 1717 aa33.21■■■□□ 2.91
VTI1B-201ENST00000216456 CADPS2Q86UW7 1296 aa33.19■■■□□ 2.9
VTI1B-201ENST00000216456 COL16A1Q07092 1604 aaPredicted RBP33.14■■■□□ 2.9
VTI1B-201ENST00000216456 MPHOSPH9Q99550 1183 aa33.13■■■□□ 2.89
VTI1B-201ENST00000216456 BRINP3Q76B58 766 aa33.11■■■□□ 2.89
VTI1B-201ENST00000216456 VGFO15240 615 aaPredicted RBP33.1■■■□□ 2.89
VTI1B-201ENST00000216456 SETD1AO15047 1707 aaKnown RBP33.09■■■□□ 2.89
VTI1B-201ENST00000216456 JCADQ9P266 1359 aa33.09■■■□□ 2.89
VTI1B-201ENST00000216456 RGL3Q3MIN7 710 aa33.08■■■□□ 2.89
VTI1B-201ENST00000216456 POTEAQ6S8J7 498 aa33.07■■■□□ 2.88
VTI1B-201ENST00000216456 MST1RQ04912 1400 aa33.07■■■□□ 2.88
VTI1B-201ENST00000216456 PPLO60437 1756 aa33.06■■■□□ 2.88
VTI1B-201ENST00000216456 RPGRIP1LQ68CZ1 1315 aa33.06■■■□□ 2.88
VTI1B-201ENST00000216456 ROBO2Q9HCK4 1378 aa33.06■■■□□ 2.88
VTI1B-201ENST00000216456 ADGRF5Q8IZF2 1346 aa33.04■■■□□ 2.88
VTI1B-201ENST00000216456 DCCP43146 1447 aa33.04■■■□□ 2.88
VTI1B-201ENST00000216456 ADGRL3Q9HAR2 1447 aa33.04■■■□□ 2.88
VTI1B-201ENST00000216456 AHDC1Q5TGY3 1603 aaPredicted RBP33.04■■■□□ 2.88
VTI1B-201ENST00000216456 NALCNQ8IZF0 1738 aa33.04■■■□□ 2.88
VTI1B-201ENST00000216456 CCDC144AA2RUR9 1427 aa33.03■■■□□ 2.88
VTI1B-201ENST00000216456 DDX17Q92841 729 aaKnown RBP33.03■■■□□ 2.88
VTI1B-201ENST00000216456 LRP6O75581 1613 aa33.01■■■□□ 2.87
VTI1B-201ENST00000216456 ASXL1Q8IXJ9 1541 aa33.01■■■□□ 2.87
VTI1B-201ENST00000216456 SPATA31E1Q6ZUB1 1445 aa33.01■■■□□ 2.87
VTI1B-201ENST00000216456 SETD5Q9C0A6 1442 aa33■■■□□ 2.87
VTI1B-201ENST00000216456 PTCH1Q13635 1447 aa32.96■■■□□ 2.87
VTI1B-201ENST00000216456 RAB3GAP2Q9H2M9 1393 aa32.93■■■□□ 2.86
VTI1B-201ENST00000216456 C1orf167Q5SNV9 1468 aa32.9■■■□□ 2.86
VTI1B-201ENST00000216456 SPATA31A6Q5VVP1 1343 aa32.89■■■□□ 2.86
VTI1B-201ENST00000216456 NUTM2BA6NNL0 878 aaPredicted RBP32.89■■■□□ 2.86
VTI1B-201ENST00000216456 NUTM2EB1AL46 878 aaPredicted RBP32.89■■■□□ 2.86
VTI1B-201ENST00000216456 NUTM2AQ8IVF1 878 aaPredicted RBP32.89■■■□□ 2.86
VTI1B-201ENST00000216456 STK26Q9P289 416 aa32.89■■■□□ 2.86
VTI1B-201ENST00000216456 IFT172Q9UG01 1749 aa32.88■■■□□ 2.85
VTI1B-201ENST00000216456 SHPRHQ149N8 1683 aa32.88■■■□□ 2.85
VTI1B-201ENST00000216456 NHSL1Q5SYE7 1610 aa32.88■■■□□ 2.85
VTI1B-201ENST00000216456 TMEM132EQ6IEE7 984 aa32.88■■■□□ 2.85
VTI1B-201ENST00000216456 ORAI2Q96SN7 254 aa32.88■■■□□ 2.85
VTI1B-201ENST00000216456 PRAG1Q86YV5 1406 aa32.87■■■□□ 2.85
VTI1B-201ENST00000216456 MEX3CQ5U5Q3 659 aaKnown RBP32.86■■■□□ 2.85
VTI1B-201ENST00000216456 ANKRD30BQ9BXX2 1392 aa32.84■■■□□ 2.85
VTI1B-201ENST00000216456 WAPLQ7Z5K2 1190 aa32.84■■■□□ 2.85
VTI1B-201ENST00000216456 PIK3C2GO75747 1445 aa32.81■■■□□ 2.84
VTI1B-201ENST00000216456 PLEKHH1Q9ULM0 1364 aa32.81■■■□□ 2.84
VTI1B-201ENST00000216456 LRRC59Q96AG4 307 aaKnown RBP32.77■■■□□ 2.84
VTI1B-201ENST00000216456 LRPPRCP42704 1394 aaKnown RBP32.77■■■□□ 2.84
VTI1B-201ENST00000216456 PNPLA6Q8IY17 1366 aa32.76■■■□□ 2.83
VTI1B-201ENST00000216456 NUTM2FA1L443 756 aa32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms