RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MADDQ8WXG6 1647 aa14.11□□□□□ -0.15
USP28-201ENST00000003302 TCERG1O14776 1098 aaKnown RBP14.1□□□□□ -0.15
USP28-201ENST00000003302 IGHDP01880 384 aa14.1□□□□□ -0.15
USP28-201ENST00000003302 CLTCL1P53675 1640 aa14.1□□□□□ -0.15
USP28-201ENST00000003302 MYOM1P52179 1685 aa14.1□□□□□ -0.15
USP28-201ENST00000003302 SEC24BO95487 1268 aa14.09□□□□□ -0.15
USP28-201ENST00000003302 C8orf34Q49A92 452 aa14.09□□□□□ -0.15
USP28-201ENST00000003302 KIF3BO15066 747 aa14.09□□□□□ -0.15
USP28-201ENST00000003302 BCL2L13Q9BXK5 485 aa14.09□□□□□ -0.15
USP28-201ENST00000003302 RNF17Q9BXT8 1623 aaKnown RBP14.09□□□□□ -0.15
USP28-201ENST00000003302 PDE3BQ13370 1112 aa14.08□□□□□ -0.15
USP28-201ENST00000003302 TMEM132EQ6IEE7 984 aa14.08□□□□□ -0.15
USP28-201ENST00000003302 MYT1LQ9UL68 1186 aa14.08□□□□□ -0.16
USP28-201ENST00000003302 ABCC2Q92887 1545 aa14.08□□□□□ -0.16
USP28-201ENST00000003302 MAST1Q9Y2H9 1570 aa14.08□□□□□ -0.16
USP28-201ENST00000003302 WDR43Q15061 677 aaKnown RBP eCLIP14.07□□□□□ -0.16
USP28-201ENST00000003302 SPAG9O60271 1321 aaKnown RBP14.07□□□□□ -0.16
USP28-201ENST00000003302 PANK1Q8TE04 598 aa14.07□□□□□ -0.16
USP28-201ENST00000003302 PLCH2O75038 1416 aa14.07□□□□□ -0.16
USP28-201ENST00000003302 SLFN5Q08AF3 891 aa14.06□□□□□ -0.16
USP28-201ENST00000003302 PLXNC1O60486 1568 aa14.06□□□□□ -0.16
USP28-201ENST00000003302 CLASP1Q7Z460 1538 aa14.06□□□□□ -0.16
USP28-201ENST00000003302 IQGAP1P46940 1657 aa14.06□□□□□ -0.16
USP28-201ENST00000003302 DUOX2Q9NRD8 1548 aa14.06□□□□□ -0.16
USP28-201ENST00000003302 RSPH4AQ5TD94 716 aa14.06□□□□□ -0.16
USP28-201ENST00000003302 ZCCHC11Q5TAX3 1644 aaKnown RBP14.05□□□□□ -0.16
USP28-201ENST00000003302 SLC12A5Q9H2X9 1139 aa14.05□□□□□ -0.16
USP28-201ENST00000003302 GOLGA2Q08379 1002 aa14.05□□□□□ -0.16
USP28-201ENST00000003302 EFCAB2Q5VUJ9 269 aa14.05□□□□□ -0.16
USP28-201ENST00000003302 SCAPERQ9BY12 1400 aa14.05□□□□□ -0.16
USP28-201ENST00000003302 ABCC1P33527 1531 aa14.04□□□□□ -0.16
USP28-201ENST00000003302 TRAK1Q9UPV9 953 aa14.04□□□□□ -0.16
USP28-201ENST00000003302 CHGAP10645 457 aaKnown RBP14.03□□□□□ -0.16
USP28-201ENST00000003302 RLBP1P12271 317 aa14.03□□□□□ -0.16
USP28-201ENST00000003302 COG6Q9Y2V7 657 aa14.03□□□□□ -0.16
USP28-201ENST00000003302 ERVK-7P63135 1459 aa14.02□□□□□ -0.16
USP28-201ENST00000003302 SAFB2Q14151 953 aaKnown RBP eCLIP14.02□□□□□ -0.16
USP28-201ENST00000003302 LAMC1P11047 1609 aa14.02□□□□□ -0.17
USP28-201ENST00000003302 BRPF3Q9ULD4 1205 aa14.02□□□□□ -0.17
USP28-201ENST00000003302 ANO8Q9HCE9 1232 aaPredicted RBP14.01□□□□□ -0.17
USP28-201ENST00000003302 RTL5Q5HYW3 569 aaPredicted RBP14.01□□□□□ -0.17
USP28-201ENST00000003302 ZFYVE16Q7Z3T8 1539 aa14.01□□□□□ -0.17
USP28-201ENST00000003302 WASHC2CQ9Y4E1 1318 aa14.01□□□□□ -0.17
USP28-201ENST00000003302 TRMT2AQ8IZ69 625 aaKnown RBP14.01□□□□□ -0.17
USP28-201ENST00000003302 SCAF11Q99590 1463 aaKnown RBP14□□□□□ -0.17
USP28-201ENST00000003302 CLUAP1Q96AJ1 413 aa14□□□□□ -0.17
USP28-201ENST00000003302 SPHKAPQ2M3C7 1700 aa14□□□□□ -0.17
USP28-201ENST00000003302 ASXL1Q8IXJ9 1541 aa14□□□□□ -0.17
USP28-201ENST00000003302 FRAT1Q92837 279 aaPredicted RBP13.99□□□□□ -0.17
USP28-201ENST00000003302 USP19O94966 1318 aa13.99□□□□□ -0.17
USP28-201ENST00000003302 MS4A1P11836 297 aa13.99□□□□□ -0.17
USP28-201ENST00000003302 EIF2AK4Q9P2K8 1649 aaKnown RBP13.99□□□□□ -0.17
USP28-201ENST00000003302 NFKBIBQ15653 356 aa13.98□□□□□ -0.17
USP28-201ENST00000003302 FRAT2O75474 233 aaPredicted RBP13.98□□□□□ -0.17
USP28-201ENST00000003302 FBLN1P23142 703 aa13.98□□□□□ -0.17
USP28-201ENST00000003302 MROH2AA6NES4 1674 aa13.98□□□□□ -0.17
USP28-201ENST00000003302 TRPM2O94759 1503 aa13.98□□□□□ -0.17
USP28-201ENST00000003302 CEP152O94986 1710 aa13.97□□□□□ -0.17
USP28-201ENST00000003302 ABCA6Q8N139 1617 aa13.97□□□□□ -0.17
USP28-201ENST00000003302 PTPRTO14522 1441 aa13.97□□□□□ -0.17
USP28-201ENST00000003302 WWC1Q8IX03 1113 aa13.97□□□□□ -0.17
USP28-201ENST00000003302 PCDHB15Q9Y5E8 787 aa13.96□□□□□ -0.17
USP28-201ENST00000003302 MROH1Q8NDA8 1641 aa13.96□□□□□ -0.18
USP28-201ENST00000003302 SYNMO15061 1565 aa13.95□□□□□ -0.18
USP28-201ENST00000003302 GGT6Q6P531 493 aa13.95□□□□□ -0.18
USP28-201ENST00000003302 NOS1P29475 1434 aa13.94□□□□□ -0.18
USP28-201ENST00000003302 INSRP06213 1382 aa13.94□□□□□ -0.18
USP28-201ENST00000003302 CENPQQ7L2Z9 268 aaPredicted RBP13.94□□□□□ -0.18
USP28-201ENST00000003302 FANCAO15360 1455 aa13.93□□□□□ -0.18
USP28-201ENST00000003302 PIK3C2GO75747 1445 aa13.92□□□□□ -0.18
USP28-201ENST00000003302 FAM161AQ3B820 660 aa13.92□□□□□ -0.18
USP28-201ENST00000003302 NSD3Q9BZ95 1437 aa13.92□□□□□ -0.18
USP28-201ENST00000003302 NKTRP30414 1462 aaKnown RBP13.92□□□□□ -0.18
USP28-201ENST00000003302 TSR2Q969E8 191 aaKnown RBP13.92□□□□□ -0.18
USP28-201ENST00000003302 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.92□□□□□ -0.18
USP28-201ENST00000003302 MTHFSP49914 203 aa13.92□□□□□ -0.18
USP28-201ENST00000003302 TCP11L2Q8N4U5 519 aa13.92□□□□□ -0.18
USP28-201ENST00000003302 ATP7AQ04656 1500 aa13.9□□□□□ -0.18
USP28-201ENST00000003302 SPRYD3Q8NCJ5 442 aa13.9□□□□□ -0.18
USP28-201ENST00000003302 CABP2Q9NPB3 220 aa13.9□□□□□ -0.18
USP28-201ENST00000003302 SLKQ9H2G2 1235 aaPredicted RBP13.89□□□□□ -0.19
USP28-201ENST00000003302 KDM5AP29375 1690 aaKnown RBP13.89□□□□□ -0.19
USP28-201ENST00000003302 SHPRHQ149N8 1683 aa13.89□□□□□ -0.19
USP28-201ENST00000003302 PPRC1Q5VV67 1664 aaKnown RBP13.89□□□□□ -0.19
USP28-201ENST00000003302 DEPDC5O75140 1603 aa13.89□□□□□ -0.19
USP28-201ENST00000003302 MAP3K4Q9Y6R4 1608 aa13.89□□□□□ -0.19
USP28-201ENST00000003302 RAPGEF3O95398 923 aa13.88□□□□□ -0.19
USP28-201ENST00000003302 ADGRL1O94910 1474 aa13.88□□□□□ -0.19
USP28-201ENST00000003302 RARSP54136 660 aaKnown RBP13.87□□□□□ -0.19
USP28-201ENST00000003302 STK26Q9P289 416 aa13.87□□□□□ -0.19
USP28-201ENST00000003302 TET3O43151 1660 aa13.87□□□□□ -0.19
USP28-201ENST00000003302 MORC1Q86VD1 984 aa13.87□□□□□ -0.19
USP28-201ENST00000003302 VWDEQ8N2E2 1590 aa13.86□□□□□ -0.19
USP28-201ENST00000003302 CENPJQ9HC77 1338 aaPredicted RBP13.86□□□□□ -0.19
USP28-201ENST00000003302 INO80Q9ULG1 1556 aaPredicted RBP13.86□□□□□ -0.19
USP28-201ENST00000003302 E9PSI1 815 aa13.86□□□□□ -0.19
USP28-201ENST00000003302 ARXQ96QS3 562 aa13.85□□□□□ -0.19
USP28-201ENST00000003302 NPATQ14207 1427 aa13.85□□□□□ -0.19
USP28-201ENST00000003302 KIDINS220Q9ULH0 1771 aa13.85□□□□□ -0.19
USP28-201ENST00000003302 POGKQ9P215 609 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms