RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Pibf1E9Q6K3 756 aa17.26■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Kdm3bQ6ZPY7 1562 aa17.26■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Ppp2r1aQ76MZ3 589 aa17.26■□□□□ 0.35
Clcn3-204ENSMUST00000110301 PrxO55103 1391 aa17.25■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Polr3aB2RXC6 1390 aa17.25■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Ylpm1Q9R0I7 1386 aaKnown RBP17.24■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Supt16hQ920B9 1047 aa17.23■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Rtf1A2AQ19 715 aaKnown RBP17.22■□□□□ 0.35
Clcn3-204ENSMUST00000110301 HnrnpmQ9D0E1 729 aaKnown RBP17.22■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Abcc2Q8VI47 1543 aa17.22■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Kdm5bQ80Y84 1544 aa17.22■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Rtl5Q5DTT4 599 aa17.21■□□□□ 0.35
Clcn3-204ENSMUST00000110301 Cdk19Q8BWD8 501 aa17.21■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Pip4k2bQ80XI4 416 aa17.2■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Znf608Q56A10 1511 aa17.2■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Gtf3c5Q8R2T8 520 aa17.2■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Asxl1P59598 1514 aa17.19■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Gm21190A0A0G2JGJ6 266 aa17.19■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Tnnt1O88346 262 aa17.19■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Ncoa1P70365 1447 aa17.19■□□□□ 0.34
Clcn3-204ENSMUST00000110301 DaxxO35613 739 aa17.19■□□□□ 0.34
Clcn3-204ENSMUST00000110301 4930567H17RikQ3V0K5 233 aa17.18■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Slc52a2Q9D8F3 450 aa17.17■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Zfp777B9EKF4 885 aa17.16■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Apaf1O88879 1249 aa17.16■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Cluap1Q8R3P7 413 aa17.16■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Zranb1Q7M760 708 aa17.16■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Chmp5Q9D7S9 219 aa17.16■□□□□ 0.34
Clcn3-204ENSMUST00000110301 Map3k4O08648 1597 aa17.14■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Zfp444Q3TDV8 331 aaKnown RBP17.14■□□□□ 0.33
Clcn3-204ENSMUST00000110301 FanciQ8K368 1330 aa17.13■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Kdm6bQ5NCY0 1641 aa17.13■□□□□ 0.33
Clcn3-204ENSMUST00000110301 CanxP35564 591 aaKnown RBP17.13■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Ccdc30Q8BVF4 654 aa17.13■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Rab3gap2Q8BMG7 1366 aa17.13■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Stk31Q99MW1 1018 aa17.12■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Gcc2Q8CHG3 1679 aa17.12■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Hsp90ab1P11499 724 aaKnown RBP17.12■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Q3TQI7 289 aaKnown RBP17.12■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Ccar1Q8CH18 1146 aaKnown RBP17.11■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Ptch1Q61115 1434 aa17.1■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Adgrl2Q8JZZ7 1487 aa17.1■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Rrbp1Q99PL5 1605 aaKnown RBP17.1■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Rtn4Q99P72 1162 aaKnown RBP17.1■□□□□ 0.33
Clcn3-204ENSMUST00000110301 DroshaQ5HZJ0 1373 aaKnown RBP17.1■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Ralbp1Q62172 648 aa17.1■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Ccdc60Q8C4J0 545 aa17.09■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Kiaa1551Q5DTW7 1521 aa17.09■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Mbd3Q9Z2D8 285 aaKnown RBP17.09■□□□□ 0.33
Clcn3-204ENSMUST00000110301 AlkP97793 1621 aa17.09■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Lrrc9Q8CDN9 1456 aa17.08■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Cfap74Q3UY96 1578 aa17.08■□□□□ 0.33
Clcn3-204ENSMUST00000110301 Nolc1E9Q5C9 702 aaKnown RBP17.08■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Fyb1O35601 819 aa17.07■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Mug2P28666 1451 aa17.07■□□□□ 0.32
Clcn3-204ENSMUST00000110301 PtprtQ99M80 1454 aa17.06■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Ggt6Q6PDE7 497 aa17.06■□□□□ 0.32
Clcn3-204ENSMUST00000110301 PtprgQ05909 1442 aa17.06■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Kif16bB1AVY7 1312 aa17.06■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Evi5lH3BKQ3 813 aa17.05■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Cald1E9QA15 768 aaKnown RBP17.03■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Asxl2Q8BZ32 1370 aa17.02■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Pak3Q61036 559 aa17.02■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Mroh2aD3Z750 1679 aa17.02■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Cdk13Q69ZA1 1511 aaKnown RBP17.02■□□□□ 0.32
Clcn3-204ENSMUST00000110301 Dnmt1P13864 1620 aaKnown RBP17.02■□□□□ 0.31
Clcn3-204ENSMUST00000110301 GphnQ8BUV3 769 aaKnown RBP17.01■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Adgrl3Q80TS3 1537 aa17.01■□□□□ 0.31
Clcn3-204ENSMUST00000110301 MpripP97434 1024 aa17■□□□□ 0.31
Clcn3-204ENSMUST00000110301 G3bp1P97855 465 aaKnown RBP17■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Nectin2P32507 530 aa16.99■□□□□ 0.31
Clcn3-204ENSMUST00000110301 HdgfP51859 237 aaKnown RBP16.99■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Pank1Q8K4K6 548 aa16.99■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Q3UJC8 639 aa16.98■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Chmp4bQ9D8B3 224 aaKnown RBP16.98■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Gli2Q0VGT2 1544 aa16.98■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Fam208aQ69ZR9 1610 aaKnown RBP16.98■□□□□ 0.31
Clcn3-204ENSMUST00000110301 SphkapQ6NSW3 1687 aa16.98■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Znf518aB2RRF6 1478 aaKnown RBP16.98■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Kcnh8P59111 1102 aa16.97■□□□□ 0.31
Clcn3-204ENSMUST00000110301 RalgapbQ8BQZ4 1484 aa16.97■□□□□ 0.31
Clcn3-204ENSMUST00000110301 TatQ8QZR1 454 aa16.97■□□□□ 0.31
Clcn3-204ENSMUST00000110301 EspnQ9ET47 871 aa16.97■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Camsap2Q8C1B1 1461 aa16.97■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Fmn2Q9JL04 1578 aa16.97■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Swt1Q9DBQ9 907 aa16.96■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Atf3Q60765 181 aa16.96■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Usp16Q99LG0 825 aa16.96■□□□□ 0.31
Clcn3-204ENSMUST00000110301 BccipQ9CWI3 316 aa16.96■□□□□ 0.31
Clcn3-204ENSMUST00000110301 Dusp27Q148W8 1138 aa16.96■□□□□ 0.3
Clcn3-204ENSMUST00000110301 L3mbtl2P59178 703 aa16.95■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Rbm25B2RY56 838 aaKnown RBP16.95■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Nutm1Q8BHP2 1126 aa16.95■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Abcc6Q9R1S7 1498 aa16.94■□□□□ 0.3
Clcn3-204ENSMUST00000110301 AatkQ80YE4 1365 aa16.94■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Dennd4bQ3U1Y4 1499 aa16.94■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Cpsf1Q9EPU4 1441 aaKnown RBP16.93■□□□□ 0.3
Clcn3-204ENSMUST00000110301 PalmQ9Z0P4 383 aa16.92■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Edc4Q3UJB9 1406 aaKnown RBP16.92■□□□□ 0.3
Clcn3-204ENSMUST00000110301 Gm10563F6WIE4 79 aa16.92■□□□□ 0.3
Retrieved 100 of 22,080 RNA–protein pairs in 102.4 ms