RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-225	ENST00000638144	GPD1L	Q8N335	351 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	BEST2	Q8NFU1	509 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	LNX1	Q8TBB1	728 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	PIK3R5	Q8WYR1	880 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	RXFP1	Q9HBX9	757 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	MAN1C1	Q9NR34	630 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	TSHZ2	Q9NRE2	1034 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	STK39	Q9UEW8	545 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	DOCK6	Q96HP0	2047 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	PTPRJ	Q12913	1337 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	MUC3A	Q02505	3323 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	SPTLC1	O15269	473 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	IL18RAP	O95256	599 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	GLUD1	P00367	558 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	MYL1	P05976	194 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	KNOP1	Q1ED39	458 aa	Known RBP	13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	VARS2	Q5ST30	1063 aa	Known RBP	13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	C9orf57	Q5W0N0	161 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	TMC5	Q6UXY8	1006 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	TMEM184A	Q6ZMB5	413 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	HS2ST1	Q7LGA3	356 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	CD302	Q8IX05	232 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	FBXL18	Q96ME1	805 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	CLSTN3	Q9BQT9	956 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	MTMR12	Q9C0I1	747 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	ASB7	Q9H672	318 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	DPP3	Q9NY33	737 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	SSX2IP	Q9Y2D8	614 aa		13.56	□□□□□ -0.24
CLN6-225	ENST00000638144	FSD2	A1L4K1	749 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	TGM5	O43548	720 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	XPOT	O43592	962 aa	Known RBP	13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	TRAPPC3	O43617	180 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	RFPL2	O75678	378 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	RHOBTB3	O94955	611 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	LDHA	P00338	332 aa	Known RBP	13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	CYP3A5	P20815	502 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	OR1D2	P34982	312 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	CDR1	P51861	262 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	ARPP19	P56211	112 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	SMAD2	Q15796	467 aa	Known RBP	13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	SNRNP35	Q16560	246 aa	Known RBP	13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	CCDC47	Q96A33	483 aa	Known RBP	13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	SUSD3	Q96L08	255 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	S1PR5	Q9H228	398 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	KCTD10	Q9H3F6	313 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	CD320	Q9NPF0	282 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	MTRR	Q9UBK8	725 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	DERA	Q9Y315	318 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	C2CD2	Q9Y426	696 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	CDY1	Q9Y6F8	540 aa		13.55	□□□□□ -0.24
CLN6-225	ENST00000638144	TRIO	O75962	3097 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	ZNF233	A6NK53	670 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	ITGB3	P05106	788 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	DLAT	P10515	647 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	POLR2B	P30876	1174 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	LILRA4	P59901	499 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	PSMD2	Q13200	908 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	ISM2	Q6H9L7	571 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	DSTYK	Q6XUX3	929 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	PPFIBP1	Q86W92	1011 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	C1orf127	Q8N9H9	656 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	XXYLT1	Q8NBI6	393 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	OR5B17	Q8NGF7	314 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	CCDC127	Q96BQ5	260 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	POP1	Q99575	1024 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	DZANK1	Q9NVP4	752 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	FNIP2	Q9P278	1114 aa		13.54	□□□□□ -0.24
CLN6-225	ENST00000638144	DENND4A	Q7Z401	1863 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	ANO9	A1A5B4	782 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	PIR	O00625	290 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	EXOC3	O60645	756 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	KIN	O60870	393 aa	Known RBP	13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	PRPF40A	O75400	957 aa	Known RBP	13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	NR3C1	P04150	777 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	KRT19	P08727	400 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	OR4Q2	P0C623	313 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	TMEM191B	P0C7N4	346 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	SSTR3	P32745	418 aa	Predicted RBP	13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	CASP4	P49662	377 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	CREM	Q03060	361 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	ZP2	Q05996	745 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	CYP24A1	Q07973	514 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	KCNB1	Q14721	858 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	PUS10	Q3MIT2	529 aa	Known RBP	13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	CTXN3	Q4LDR2	81 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	ANKS3	Q6ZW76	656 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	KREMEN2	Q8NCW0	462 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	PLEKHO2	Q8TD55	490 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	SUSD6	Q92537	303 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	SENP8	Q96LD8	212 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	SFXN1	Q9H9B4	322 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	FBXL5	Q9UKA1	691 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	PCDHB8	Q9UN66	801 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	AGAP1	Q9UPQ3	857 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	FAM50B	Q9Y247	325 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144	PCDHA5	Q9Y5H7	936 aa		13.53	□□□□□ -0.24
CLN6-225	ENST00000638144		M0QZQ0	153 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms