RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TKTP29401 623 aaKnown RBP18.01■□□□□ 0.47
CLN3-264ENST00000637985 ELF1P32519 619 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 ARL2P36404 184 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 CCINQ13939 588 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 SH3PXD2AQ5TCZ1 1133 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 RALGPS2Q86X27 583 aaPredicted RBP18.01■□□□□ 0.47
CLN3-264ENST00000637985 WASF1Q92558 559 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 LXNQ9BS40 222 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 SCNM1Q9BWG6 230 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 LAMA5O15230 3695 aa18.01■□□□□ 0.47
CLN3-264ENST00000637985 LOC400499M0QZD8 3231 aa18■□□□□ 0.47
CLN3-264ENST00000637985 C4orf47A7E2U8 309 aa18■□□□□ 0.47
CLN3-264ENST00000637985 SPECC1L-ADORA2AF8WAN1 911 aa18■□□□□ 0.47
CLN3-264ENST00000637985 EXTL3O43909 919 aa18■□□□□ 0.47
CLN3-264ENST00000637985 B3GAT3O94766 335 aa18■□□□□ 0.47
CLN3-264ENST00000637985 ATF2P15336 505 aa18■□□□□ 0.47
CLN3-264ENST00000637985 CTHP32929 405 aa18■□□□□ 0.47
CLN3-264ENST00000637985 KPNA1P52294 538 aaPredicted RBP18■□□□□ 0.47
CLN3-264ENST00000637985 FCHO2Q0JRZ9 810 aa18■□□□□ 0.47
CLN3-264ENST00000637985 HS6ST3Q8IZP7 471 aa18■□□□□ 0.47
CLN3-264ENST00000637985 E2F7Q96AV8 911 aa18■□□□□ 0.47
CLN3-264ENST00000637985 RSPRY1Q96DX4 576 aa18■□□□□ 0.47
CLN3-264ENST00000637985 EDEM2Q9BV94 578 aa18■□□□□ 0.47
CLN3-264ENST00000637985 SNTG2Q9NY99 539 aa18■□□□□ 0.47
CLN3-264ENST00000637985 DDX25Q9UHL0 483 aaKnown RBP18■□□□□ 0.47
CLN3-264ENST00000637985 KCNJ14Q9UNX9 436 aa18■□□□□ 0.47
CLN3-264ENST00000637985 INSL5Q9Y5Q6 135 aa18■□□□□ 0.47
CLN3-264ENST00000637985 EML5Q05BV3 1969 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 CCDC194A0A1B0GVG4 234 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 SLC37A4O43826 429 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 RECQL4O94761 1208 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 SEC24AO95486 1093 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 CCDC192P0DO97 292 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 CEACAM1P13688 526 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 GLRA2P23416 452 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 PXNP49023 591 aaPredicted RBP17.99■□□□□ 0.47
CLN3-264ENST00000637985 RBM25P49756 843 aaKnown RBP17.99■□□□□ 0.47
CLN3-264ENST00000637985 EPHA5P54756 1037 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 EPHA7Q15375 998 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 FAM20AQ96MK3 541 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 CYP4F11Q9HBI6 524 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 KCNMB3Q9NPA1 279 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 RGL1Q9NZL6 768 aa17.99■□□□□ 0.47
CLN3-264ENST00000637985 ORC3Q9UBD5 711 aaPredicted RBP17.99■□□□□ 0.47
CLN3-264ENST00000637985 CTDNEP1O95476 244 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 GJA1P17302 382 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 CSRP1P21291 193 aaKnown RBP17.98■□□□□ 0.47
CLN3-264ENST00000637985 CLCNKBP51801 687 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 INF2Q27J81 1249 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 PLK5Q496M5 336 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 DAB2IPQ5VWQ8 1189 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 IQCEQ6IPM2 695 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 YAF2Q8IY57 180 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 LEMD2Q8NC56 503 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 NAP1L4Q99733 375 aaKnown RBP17.98■□□□□ 0.47
CLN3-264ENST00000637985 GPR88Q9GZN0 384 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 ZSWIM4Q9H7M6 989 aa17.98■□□□□ 0.47
CLN3-264ENST00000637985 FREM2Q5SZK8 3169 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 I3L4J1 428 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 TRAPPC3O43617 180 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 GCFC2P16383 781 aaKnown RBP17.97■□□□□ 0.47
CLN3-264ENST00000637985 PON2Q15165 354 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 TEAD2Q15562 447 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 ME3Q16798 604 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 UPP1Q16831 310 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 PPP4R3AQ6IN85 833 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 PKN3Q6P5Z2 889 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 NEK8Q86SG6 692 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 GTF3C6Q969F1 213 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 PRIMPOLQ96LW4 560 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 ZNF512Q96ME7 567 aaPredicted RBP17.97■□□□□ 0.47
CLN3-264ENST00000637985 CEP72Q9P209 647 aa17.97■□□□□ 0.47
CLN3-264ENST00000637985 TBX3O15119 743 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 DGAT1O75907 488 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 MYL4P12829 197 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 BRCC3P46736 316 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 NEK4P51957 841 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 CTTNQ14247 550 aaKnown RBP17.96■□□□□ 0.47
CLN3-264ENST00000637985 ELMOD1Q8N336 334 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 C3orf58Q8NDZ4 430 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 FAM200AQ8TCP9 573 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 DYDC2Q96IM9 177 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 DUSP15Q9H1R2 295 aaPredicted RBP17.96■□□□□ 0.47
CLN3-264ENST00000637985 PDZD7Q9H5P4 517 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 PRMT7Q9NVM4 692 aaPredicted RBP17.96■□□□□ 0.47
CLN3-264ENST00000637985 GTSE1Q9NYZ3 720 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 NEUROG3Q9Y4Z2 214 aa17.96■□□□□ 0.47
CLN3-264ENST00000637985 LNP1A1A4G5 178 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 TTLL13PA6NNM8 815 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 FDPSP14324 419 aaKnown RBP17.95■□□□□ 0.46
CLN3-264ENST00000637985 ARPP19P56211 112 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 CYP4A11Q02928 519 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 FAM187BQ17R55 369 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 TPGS2Q68CL5 300 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 PIK3AP1Q6ZUJ8 805 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 NECAB1Q8N987 351 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 TTC8Q8TAM2 541 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 SHKBP1Q8TBC3 707 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 UROC1Q96N76 676 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms