RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 OFD1O75665 1012 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 LCA5LO95447 670 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 STAU1O95793 577 aaKnown RBP12.64□□□□□ -0.39
CLN6-223ENST00000637823 EOMESO95936 686 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 ITGB3P05106 788 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 PLEKP08567 350 aaPredicted RBP12.64□□□□□ -0.39
CLN6-223ENST00000637823 KRT19P08727 400 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 CCDC175P0C221 793 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 CYP3A5P20815 502 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 KRT83P78385 493 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 FAM189BP81408 668 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 CUL2Q13617 745 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 ASTE1Q2TB18 679 aaPredicted RBP12.64□□□□□ -0.39
CLN6-223ENST00000637823 ZNF699Q32M78 642 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 TRIM60Q495X7 471 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 PLEKHG4Q58EX7 1191 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 ZNF667Q5HYK9 610 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 SCARA3Q6AZY7 606 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 SPOPLQ6IQ16 392 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 KAT5Q92993 513 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 PAWRQ96IZ0 340 aaKnown RBP12.64□□□□□ -0.39
CLN6-223ENST00000637823 NIF3L1Q9GZT8 377 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 CXCL16Q9H2A7 254 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 DEF6Q9H4E7 631 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 HAUS4Q9H6D7 363 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 VRTNQ9H8Y1 702 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 SPTLC3Q9NUV7 552 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 AGAP1Q9UPQ3 857 aa12.64□□□□□ -0.39
CLN6-223ENST00000637823 NBNO60934 754 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 IPO7O95373 1038 aaKnown RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 P4HA1P13674 534 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 POLR2BP30876 1174 aaKnown RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 CLCN1P35523 988 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 USP8P40818 1118 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 KIF11P52732 1056 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 BPIFB4P59827 614 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 YWHAEP62258 255 aaKnown RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 PTK2Q05397 1052 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 MYO1EQ12965 1108 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 GPNMBQ14956 572 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 SPA17Q15506 151 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 AGMOQ6ZNB7 445 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 SLC24A5Q71RS6 500 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 ZNF571Q7Z3V5 609 aaPredicted RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 NECAB2Q7Z6G3 386 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 RTN4RL1Q86UN2 441 aaPredicted RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 VPS36Q86VN1 386 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 ECHDC2Q86YB7 292 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 REXO1L1PQ8IX06 675 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 C17orf53Q8N3J3 647 aaPredicted RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 LRRC52Q8N7C0 313 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 SEPT8Q92599 483 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 APBB2Q92870 758 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 C18orf25Q96B23 403 aaPredicted RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 ELMO3Q96BJ8 720 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 HPDLQ96IR7 371 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 TSPYL2Q9H2G4 693 aaPredicted RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 HIPK3Q9H422 1215 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 SLC38A7Q9NVC3 462 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 TRMT1Q9NXH9 659 aaKnown RBP12.63□□□□□ -0.39
CLN6-223ENST00000637823 CNTN6Q9UQ52 1028 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 ATP11BQ9Y2G3 1177 aa12.63□□□□□ -0.39
CLN6-223ENST00000637823 ANO9A1A5B4 782 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 GOLGA6L9A6NEM1 432 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 ARL5CA6NH57 179 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 C9IYK1 514 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 RBAK-RBAKDNI3L0D1 243 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 CYP26A1O43174 497 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 CLSTN1O94985 981 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 THP07101 528 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 PNMA6AP0CW24 399 aaPredicted RBP12.62□□□□□ -0.39
CLN6-223ENST00000637823 KRT5P13647 590 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 ACO1P21399 889 aaKnown RBP12.62□□□□□ -0.39
CLN6-223ENST00000637823 GUCY2FP51841 1108 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 WDR72Q3MJ13 1102 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 GLRA4Q5JXX5 417 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 C10orf76Q5T2E6 689 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 C9orf57Q5W0N0 161 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 ZNF598Q86UK7 904 aaKnown RBP12.62□□□□□ -0.39
CLN6-223ENST00000637823 GPIHBP1Q8IV16 184 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 UBR7Q8N806 425 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 LPPQ93052 612 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 PPP1R10Q96QC0 940 aaKnown RBP12.62□□□□□ -0.39
CLN6-223ENST00000637823 RPS6KC1Q96S38 1066 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 AGPAT1Q99943 283 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 DESI2Q9BSY9 194 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLN6-223ENST00000637823 BCO2Q9BYV7 579 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 MCOLN1Q9GZU1 580 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 FAM124BQ9H5Z6 455 aaPredicted RBP12.62□□□□□ -0.39
CLN6-223ENST00000637823 CYP3A43Q9HB55 503 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 TMEM39AQ9NV64 488 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 TTC3P53804 2025 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 UMODL1Q5DID0 1318 aa12.62□□□□□ -0.39
CLN6-223ENST00000637823 MICAL3Q7RTP6 2002 aa12.61□□□□□ -0.39
CLN6-223ENST00000637823 USP27XA6NNY8 438 aa12.61□□□□□ -0.39
CLN6-223ENST00000637823 MEIS3P2A8K0S8 358 aa12.61□□□□□ -0.39
CLN6-223ENST00000637823 PIRO00625 290 aa12.61□□□□□ -0.39
CLN6-223ENST00000637823 ENPP3O14638 875 aa12.61□□□□□ -0.39
CLN6-223ENST00000637823 PTGESO14684 152 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms