RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TIPINQ9BVW5 301 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 BCO2Q9BYV7 579 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 LTB4R2Q9NPC1 389 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 HEBP1Q9NRV9 189 aa17.63■□□□□ 0.41
CLN3-246ENST00000636228 CD2BP2O95400 341 aaKnown RBP17.62■□□□□ 0.41
CLN3-246ENST00000636228 FCARP24071 287 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 TARSP26639 723 aaKnown RBP17.62■□□□□ 0.41
CLN3-246ENST00000636228 GJB2P29033 226 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 GUCY2FP51841 1108 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 CSTF1Q05048 431 aaKnown RBP17.62■□□□□ 0.41
CLN3-246ENST00000636228 MCL1Q07820 350 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 TWF1Q12792 350 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 DHX8Q14562 1220 aaKnown RBP17.62■□□□□ 0.41
CLN3-246ENST00000636228 FAM78AQ5JUQ0 283 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 ZBTB41Q5SVQ8 909 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 KIAA2013Q8IYS2 634 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 DCLK2Q8N568 766 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 LRRC15Q8TF66 581 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 KIF12Q96FN5 646 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 BICD1Q96G01 975 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 CDK5RAP3Q96JB5 506 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 CEP72Q9P209 647 aa17.62■□□□□ 0.41
CLN3-246ENST00000636228 H3BQV1 296 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 LAMTOR5O43504 91 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 OR4Q2P0C623 313 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 MYL4P12829 197 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 CPB1P15086 417 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 MARCKSP29966 332 aaPredicted RBP17.61■□□□□ 0.41
CLN3-246ENST00000636228 TMEM119Q4V9L6 283 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 ZNF280DQ6N043 979 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 ZPBP2Q6X784 338 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 PDZD4Q76G19 769 aaPredicted RBP17.61■□□□□ 0.41
CLN3-246ENST00000636228 APPL2Q8NEU8 664 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 ELSPBP1Q96BH3 223 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 TMX3Q96JJ7 454 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 ZNF512Q96ME7 567 aaPredicted RBP17.61■□□□□ 0.41
CLN3-246ENST00000636228 HINFPQ9BQA5 517 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 SEMA4AQ9H3S1 761 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 AVENQ9NQS1 362 aaPredicted RBP17.61■□□□□ 0.41
CLN3-246ENST00000636228 AFF4Q9UHB7 1163 aaKnown RBP17.61■□□□□ 0.41
CLN3-246ENST00000636228 PCDHB8Q9UN66 801 aa17.61■□□□□ 0.41
CLN3-246ENST00000636228 SHISA7A6NL88 538 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 LACTBL1A8MY62 500 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 MOSPD3O75425 235 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 CLTAP09496 248 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 RABEP1Q15276 862 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 CYP4A22Q5TCH4 519 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 TPGS2Q68CL5 300 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 ZC3H14Q6PJT7 736 aaKnown RBP17.6■□□□□ 0.41
CLN3-246ENST00000636228 TSSK4Q6SA08 328 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 HAUS6Q7Z4H7 955 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 PGLYRP2Q96PD5 576 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 ZFP14Q9HCL3 533 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 KIF3AQ9Y496 699 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 NOTCH4Q99466 2003 aa17.6■□□□□ 0.41
CLN3-246ENST00000636228 RIF1Q5UIP0 2472 aaKnown RBP17.6■□□□□ 0.41
CLN3-246ENST00000636228 TTC26A0AVF1 554 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 ZNF197O14709 1029 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 PPEF2O14830 753 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 VNN2O95498 520 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 VIPR2P41587 438 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 CDR1P51861 262 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 NCKAP1LP55160 1127 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 FZD5Q13467 585 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 IQCEQ6IPM2 695 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 ZNF852Q6ZMS4 543 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 GPBP1Q86WP2 473 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 GPIHBP1Q8IV16 184 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 FAM212AQ96EL1 285 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 ASB16Q96NS5 453 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 REEP2Q9BRK0 252 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 OSBPL6Q9BZF3 934 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 BRD9Q9H8M2 597 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 LARSQ9P2J5 1176 aaKnown RBP17.59■□□□□ 0.41
CLN3-246ENST00000636228 KCNG1Q9UIX4 513 aa17.59■□□□□ 0.41
CLN3-246ENST00000636228 NDRG2Q9UN36 371 aaKnown RBP17.59■□□□□ 0.41
CLN3-246ENST00000636228 M0QZQ0 153 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 LRPAP1P30533 357 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 LIG4P49917 911 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 YWHAHQ04917 246 aaPredicted RBP17.58■□□□□ 0.4
CLN3-246ENST00000636228 GRIN1Q05586 938 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 MCM6Q14566 821 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 TEAD2Q15562 447 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 ZBTB6Q15916 424 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 ENOX2Q16206 610 aaKnown RBP17.58■□□□□ 0.4
CLN3-246ENST00000636228 VITQ6UXI7 678 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 DSTYKQ6XUX3 929 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 ELMOD1Q8N336 334 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 MYCT1Q8N699 235 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 SUMF1Q8NBK3 374 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 RMDN1Q96DB5 314 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 TRMT61BQ9BVS5 477 aaKnown RBP17.58■□□□□ 0.4
CLN3-246ENST00000636228 CRISPLD1Q9H336 500 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 ZHX3Q9H4I2 956 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 PLEKHA5Q9HAU0 1116 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 KCND2Q9NZV8 630 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 TBX20Q9UMR3 447 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 SLC27A5Q9Y2P5 690 aa17.58■□□□□ 0.4
CLN3-246ENST00000636228 MYH15Q9Y2K3 1946 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 NCANO14594 1321 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms