RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 BLIDQ8IZY5 108 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 FSTL5Q8N475 847 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-212ENST00000636194 OR6B3Q8NGW1 331 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 LPIN2Q92539 896 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 SLC10A4Q96EP9 437 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 OTUD5Q96G74 571 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 CEP170P1Q96L14 293 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 KCNS3Q9BQ31 491 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 DSN1Q9H410 356 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 EXOSC4Q9NPD3 245 aaKnown RBP6.29□□□□□ -1.4
SCN1A-212ENST00000636194 RASA4BC9J798 803 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 RASA4O43374 803 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 RBP3P10745 1247 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 GRK4P32298 578 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 TECP42680 631 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 EPS8Q12929 822 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 PEX6Q13608 980 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 EFR3AQ14156 821 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 CDO1Q16878 200 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 RUNDC3AQ59EK9 446 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 HLA-DQA1Q5Y7H0 255 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 GTF2IRD2BQ6EKJ0 949 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 TMC5Q6UXY8 1006 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 CATSPER4Q7RTX7 472 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 GTF2IRD2Q86UP8 949 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 TAB3Q8N5C8 712 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-212ENST00000636194 CCDC17Q96LX7 622 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 MUC3BQ9H195 1237 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 RIC8BQ9NVN3 520 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 KLHL11Q9NVR0 708 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 PRR23AA6NEV1 266 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 DNALI1O14645 258 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-212ENST00000636194 SASH3O75995 380 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 SEC24BO95487 1268 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 PDE1AP54750 535 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 TWF1Q12792 350 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 CAMK2GQ13555 558 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-212ENST00000636194 NFIL3Q16649 462 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 CACHD1Q5VU97 1274 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 NME9Q86XW9 330 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 TEX2Q8IWB9 1127 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 MICU2Q8IYU8 434 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 SCAIQ8N9R8 606 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 USP40Q9NVE5 1235 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 TRPM2O94759 1503 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 MYO15BQ96JP2 1530 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 SVILO95425 2214 aa6.29□□□□□ -1.4
SCN1A-212ENST00000636194 DFFAO00273 331 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 GPAA1O43292 621 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 LRRN2O75325 713 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 MYL3P08590 195 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 U2AF2P26368 475 aaKnown RBP eCLIP6.28□□□□□ -1.41e-6■■■□□ 14.9
SCN1A-212ENST00000636194 HIC1Q14526 733 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 NCAPHQ15003 741 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 SLFNL1Q499Z3 407 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 MTHFD1LQ6UB35 978 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 CCDC80Q76M96 950 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF483Q8TF39 744 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 GLMNQ92990 594 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 C20orf96Q9NUD7 363 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 ITGA6P23229 1130 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 PDHA2P29803 388 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 CDK17Q00537 523 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 PDZK1Q5T2W1 519 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 OR6B2Q6IFH4 312 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 GAS2L3Q86XJ1 694 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 RAET1EQ8TD07 263 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 EME1Q96AY2 570 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 PLTPP55058 493 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 TRIM25Q14258 630 aaKnown RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 KLHL17Q6TDP4 642 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 CHPFQ8IZ52 775 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 SNX21Q969T3 373 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 MSTO1Q9BUK6 570 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 NGRNQ9NPE2 291 aaKnown RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 SSH2Q76I76 1423 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 FAM92AA1XBS5 289 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 WDR91A4D1P6 747 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 ARL5CA6NH57 179 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 ACSL4O60488 711 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 HIST1H2ABP04908 130 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 CLK3P49761 638 aaKnown RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 NUP107P57740 925 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 SMU1Q2TAY7 513 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 HIST3H2AQ7L7L0 130 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 KRT35Q92764 455 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 HIST1H2ACQ93077 130 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 GJA10Q969M2 543 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 TESCQ96BS2 214 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 RIBC2Q9H4K1 309 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 CCDC134Q9H6E4 229 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 YTHDC2Q9H6S0 1430 aaKnown RBP6.28□□□□□ -1.4
SCN1A-212ENST00000636194 C8orf4Q9NR00 106 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 KIAA1024Q9UPX6 916 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 KIF24Q5T7B8 1368 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 ANKRD36BQ8N2N9 1353 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 CASKIN1Q8WXD9 1431 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 SEMA3EO15041 775 aa6.28□□□□□ -1.4
SCN1A-212ENST00000636194 TDP2O95551 362 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms