RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HHIPL2Q6UWX4 724 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 HSPH1Q92598 858 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 RBM41Q96IZ5 413 aaKnown RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 TTC25Q96NG3 672 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 DCLK3Q9C098 648 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 R3HDM2Q9Y2K5 976 aaKnown RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 SCINQ9Y6U3 715 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 KIF13AQ9H1H9 1805 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 TMPRSS15P98073 1019 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 BMT2Q1RMZ1 405 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 SEZ6Q53EL9 994 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 C3orf62Q6ZUJ4 267 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 MCF2L2Q86YR7 1114 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 PPM1NQ8N819 430 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 ZNF668Q96K58 619 aaPredicted RBP13.32□□□□□ -0.28
LIG1-221ENST00000613670 C10orf88Q9H8K7 445 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 TMEM8AQ9HCN3 771 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 TXNDC16Q9P2K2 825 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 VAV3Q9UKW4 847 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 BCL9LQ86UU0 1499 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 LPXNO60711 386 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 ENTPD5O75356 428 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 ETS1P14921 441 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 PSMA2P25787 234 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 MARK3P27448 753 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 POLD1P28340 1107 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 SLC1A1P43005 524 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 KDSRQ06136 332 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 LRRC36Q1X8D7 754 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 ATP13A4Q4VNC1 1196 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 CRELD2Q6UXH1 353 aaPredicted RBP13.32□□□□□ -0.28
LIG1-221ENST00000613670 SYDE1Q6ZW31 735 aaPredicted RBP13.32□□□□□ -0.28
LIG1-221ENST00000613670 PODNQ7Z5L7 613 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 PCDHB2Q9Y5E7 798 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 K7ERI5 159 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 ECE2O60344 883 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 ZBED4O75132 1171 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 RNF8O76064 485 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 FMO1Q01740 532 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 SWSAP1Q6NVH7 229 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 DARS2Q6PI48 645 aaKnown RBP13.32□□□□□ -0.28
LIG1-221ENST00000613670 FAM228AQ86W67 206 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 LARGE2Q8N3Y3 721 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 MCEEQ96PE7 176 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 MXRA8Q9BRK3 442 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 TMEM121Q9BTD3 319 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
LIG1-221ENST00000613670 SMG5Q9UPR3 1016 aaKnown RBP13.32□□□□□ -0.28
LIG1-221ENST00000613670 CHD4Q14839 1912 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 FRMPD4Q14CM0 1322 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 NVLO15381 856 aaKnown RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 EDIL3O43854 480 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 NFX1Q12986 1120 aaKnown RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 RCN1Q15293 331 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 LGSNQ5TDP6 509 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 CYP4X1Q8N118 509 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 GPD1LQ8N335 351 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 KCTD6Q8NC69 237 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 ATP6V0A1Q93050 837 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 MSTO1Q9BUK6 570 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 SMYD3Q9H7B4 428 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 CHMP2BQ9UQN3 213 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 WDR64B1ANS9 1081 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 P4HA2O15460 535 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 ADRB2P07550 413 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 WLSQ5T9L3 541 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 EMC10Q5UCC4 262 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 SMC1BQ8NDV3 1235 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 KIAA1683Q9H0B3 1180 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 KCND2Q9NZV8 630 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 ZFATQ9P243 1243 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 PARP4Q9UKK3 1724 aaKnown RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 SUGT1Q9Y2Z0 365 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 UBE4BO95155 1302 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 TOM1L1O75674 476 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 UNC5CO95185 931 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 HLA-DRAP01903 254 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 PECAM1P16284 738 aaPredicted RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 PSMC5P62195 406 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 IRX1P78414 480 aaPredicted RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 PPP2R5DQ14738 602 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 CDO1Q16878 200 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 AMIGO3Q86WK7 504 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 SPDYE1Q8NFV5 336 aaPredicted RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 KREMEN1Q96MU8 473 aa13.31□□□□□ -0.28
LIG1-221ENST00000613670 PSMC3IPQ9P2W1 217 aaPredicted RBP13.31□□□□□ -0.28
LIG1-221ENST00000613670 COPEO14579 308 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 ENO1P06733 434 aaKnown RBP13.3□□□□□ -0.28
LIG1-221ENST00000613670 MMP10P09238 476 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 SERPINB6P35237 376 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 PGM1P36871 562 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 RARRES1P49788 294 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 MTFR1Q15390 333 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 ECHDC2Q86YB7 292 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 ATP11CQ8NB49 1132 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 TSSK1BQ9BXA7 367 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 TBX20Q9UMR3 447 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 PHRF1Q9P1Y6 1649 aaKnown RBP13.3□□□□□ -0.28
LIG1-221ENST00000613670 F5H423 210 aaPredicted RBP13.3□□□□□ -0.28
LIG1-221ENST00000613670 MCF2LO15068 1137 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms