RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ITGA11Q9UKX5 1188 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 SMIM28A0A1B0GU29 152 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 RCCD1A6NED2 376 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 ZNF623O75123 536 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 ANXA13P27216 316 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 GJA8P48165 433 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 ZNF699Q32M78 642 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 GLRA4Q5JXX5 417 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 GSTCDQ8NEC7 633 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 SLC30A5Q8TAD4 765 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 DIS3LQ8TF46 1054 aaKnown RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 IMPG2Q9BZV3 1241 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 DEF6Q9H4E7 631 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 ACP6Q9NPH0 428 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 PARP2Q9UGN5 583 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 TFR2Q9UP52 801 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 CNTN6Q9UQ52 1028 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 DDX3XO00571 662 aaKnown RBP eCLIP15.32■□□□□ 0.049e-13■■■■□ 21.9
USP39-220ENST00000613444 CYP26A1O43174 497 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 SELPP16109 830 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 ZSCAN20P17040 1043 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 ATF7P17544 494 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 TBXAS1P24557 533 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 POLR2BP30876 1174 aaKnown RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 ASPAP45381 313 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 ATN1P54259 1190 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 ZNF662Q6ZS27 426 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 LRRC8DQ7L1W4 858 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 LNX1Q8TBB1 728 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 EPS8L1Q8TE68 723 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 TAF4BQ92750 862 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 C18orf25Q96B23 403 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 C16orf45Q96MC5 204 aaPredicted RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 TSPAN18Q96SJ8 248 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 NIF3L1Q9GZT8 377 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 TUBGCP4Q9UGJ1 667 aa15.32■□□□□ 0.04
USP39-220ENST00000613444 NOCTQ9UK39 431 aaKnown RBP15.32■□□□□ 0.04
USP39-220ENST00000613444 TDRD15B5MCY1 1934 aaKnown RBP15.31■□□□□ 0.04
USP39-220ENST00000613444 A0A0U1RQF3 1178 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 PITPNM1O00562 1244 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 PTGESO14684 152 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 PQBP1O60828 265 aaKnown RBP15.31■□□□□ 0.04
USP39-220ENST00000613444 STAU1O95793 577 aaKnown RBP15.31■□□□□ 0.04
USP39-220ENST00000613444 KRT19P08727 400 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 CCDC172P0C7W6 258 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 KRT83P78385 493 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 C1orf53Q5VUE5 145 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 RTN4RL1Q86UN2 441 aaPredicted RBP15.31■□□□□ 0.04
USP39-220ENST00000613444 SLC47A2Q86VL8 602 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 ATICP31939 592 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 USP8P40818 1118 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 BMS1Q14692 1282 aaKnown RBP15.31■□□□□ 0.04
USP39-220ENST00000613444 AGMOQ6ZNB7 445 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 SLC20A1Q8WUM9 679 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 DDX1Q92499 740 aaKnown RBP15.31■□□□□ 0.04
USP39-220ENST00000613444 FAXDC2Q96IV6 333 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 ZFP42Q96MM3 310 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 ADAM2Q99965 735 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 LACRTQ9GZZ8 138 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 AGAP1Q9UPQ3 857 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 PCDHA13Q9Y5I0 950 aa15.31■□□□□ 0.04
USP39-220ENST00000613444 MYH10P35580 1976 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 ANO9A1A5B4 782 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 GOLGA6L9A6NEM1 432 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 PPEF2O14830 753 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 NBNO60934 754 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 CHRNB2P17787 502 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 AFF1P51825 1210 aaKnown RBP15.3■□□□□ 0.04
USP39-220ENST00000613444 VAV2P52735 878 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 RBP5P82980 135 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 SOX4Q06945 474 aaPredicted RBP15.3■□□□□ 0.04
USP39-220ENST00000613444 FAAP100Q0VG06 881 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 BFSP2Q13515 415 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 SPA17Q15506 151 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 NOP9Q86U38 636 aaKnown RBP15.3■□□□□ 0.04
USP39-220ENST00000613444 LINC01599Q8WXQ3 324 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 LPPQ93052 612 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 TOX2Q96NM4 488 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 PPP1R10Q96QC0 940 aaKnown RBP15.3■□□□□ 0.04
USP39-220ENST00000613444 BCO2Q9BYV7 579 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 IFIH1Q9BYX4 1025 aaKnown RBP15.3■□□□□ 0.04
USP39-220ENST00000613444 NAGPAQ9UK23 515 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 UBQLN1Q9UMX0 589 aaKnown RBP15.3■□□□□ 0.04
USP39-220ENST00000613444 POLIQ9UNA4 740 aa15.3■□□□□ 0.04
USP39-220ENST00000613444 ITGA4P13612 1032 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 CYP11B1P15538 503 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 RAB27AP51159 221 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 ZNF132P52740 706 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 ZNF598Q86UK7 904 aaKnown RBP15.29■□□□□ 0.04
USP39-220ENST00000613444 PALB2Q86YC2 1186 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 ANKLE1Q8NAG6 615 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 BEST2Q8NFU1 509 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 HPDLQ96IR7 371 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 AGPAT1Q99943 283 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP39-220ENST00000613444 LZTFL1Q9NQ48 299 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 RGS18Q9NS28 235 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 TRIM10Q9UDY6 481 aa15.29■□□□□ 0.04
USP39-220ENST00000613444 IPO7O95373 1038 aaKnown RBP15.29■□□□□ 0.04
USP39-220ENST00000613444 KRT5P13647 590 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms