RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DNM1LO00429 736 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 MARCH6O60337 910 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 SOD2P04179 222 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 IL9P15248 144 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 ZKSCAN1P17029 563 aaPredicted RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 TLE2Q04725 743 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 FOXL1Q12952 345 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 HSP90AA2PQ14568 343 aaPredicted RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 KRTAP15-1Q3LI76 137 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 GJC2Q5T442 439 aaPredicted RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 FNDC7Q5VTL7 733 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 KCNT2Q6UVM3 1135 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 IFNL3Q8IZI9 196 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 RMDN1Q96DB5 314 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 DNAJC2Q99543 621 aaKnown RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 CD244Q9BZW8 370 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 ZNF703Q9H7S9 590 aaPredicted RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 MMRN2Q9H8L6 949 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 MIS18AQ9NYP9 233 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 ARHGAP28Q9P2N2 729 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 FBXO10Q9UK96 956 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 RPAP1Q9BWH6 1393 aaPredicted RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 FLNBO75369 2602 aaKnown RBP5.49□□□□□ -1.53
LINC00540-201ENST00000611481 FRMPD3Q5JV73 1810 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 RLFQ13129 1914 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 TRANK1O15050 2925 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 PROB1E7EW31 1015 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 CLTBP09497 229 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 MSX2P35548 267 aaPredicted RBP5.48□□□□□ -1.53
LINC00540-201ENST00000611481 HHEXQ03014 270 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 CCL14Q16627 93 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 FAM110CQ1W6H9 321 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 BTBD8Q5XKL5 378 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 MIGA2Q7L4E1 593 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 MCM10Q7L590 875 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 FASTKD5Q7L8L6 764 aaKnown RBP5.48□□□□□ -1.53
LINC00540-201ENST00000611481 CXXC5Q7LFL8 322 aaKnown RBP5.48□□□□□ -1.53
LINC00540-201ENST00000611481 MRGPRGQ86SM5 289 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 MORC1Q86VD1 984 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 SUGP1Q8IWZ8 645 aaKnown RBP5.48□□□□□ -1.53
LINC00540-201ENST00000611481 NLGN4XQ8N0W4 816 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 ADSSL1Q8N142 457 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 LARP4BQ92615 738 aaKnown RBP5.48□□□□□ -1.53
LINC00540-201ENST00000611481 FERMT2Q96AC1 680 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 SGSM3Q96HU1 749 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 TINF2Q9BSI4 451 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 CERS4Q9HA82 394 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 TLR9Q9NR96 1032 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 PLA2G3Q9NZ20 509 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 CHD7Q9P2D1 2997 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 ARAP2Q8WZ64 1704 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 MYBBP1AQ9BQG0 1328 aaKnown RBP5.48□□□□□ -1.53
LINC00540-201ENST00000611481 TECTAO75443 2155 aa5.48□□□□□ -1.53
LINC00540-201ENST00000611481 USP24Q9UPU5 2620 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 SPTBN2O15020 2390 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 CXCL11O14625 94 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 KIAA0355O15063 1070 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 ANXA1P04083 346 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 MYOGP15173 224 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 POU3F3P20264 500 aaPredicted RBP5.47□□□□□ -1.53
LINC00540-201ENST00000611481 KLRK1P26718 216 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 CNGA1P29973 690 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 ETFBP38117 255 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 CCT4P50991 539 aaKnown RBP5.47□□□□□ -1.53
LINC00540-201ENST00000611481 RABGGTBP53611 331 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 AIMP1Q12904 312 aaKnown RBP5.47□□□□□ -1.53
LINC00540-201ENST00000611481 TBR1Q16650 682 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 TMEM240Q5SV17 173 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 USP30Q70CQ3 517 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 C16orf59Q7L2K0 433 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 COPS6Q7L5N1 327 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 ANKRD18AQ8IVF6 992 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 CFHR4Q92496 578 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 LPAR1Q92633 364 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 ALG1Q9BT22 464 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 AARSD1Q9BTE6 412 aaKnown RBP5.47□□□□□ -1.53
LINC00540-201ENST00000611481 NELFAQ9H3P2 528 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 IPPKQ9H8X2 491 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 DDX20Q9UHI6 824 aaKnown RBP5.47□□□□□ -1.53
LINC00540-201ENST00000611481 MAST4O15021 2626 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 GAKO14976 1311 aa5.47□□□□□ -1.53
LINC00540-201ENST00000611481 PLXNB2O15031 1838 aa5.46□□□□□ -1.53
LINC00540-201ENST00000611481 GBF1Q92538 1859 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 KBTBD13C9JR72 458 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 PRODHO43272 600 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 PQBP1O60828 265 aaKnown RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 FGFR1P11362 822 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 PTPN1P18031 435 aaKnown RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 ADCYAP1R1P41586 468 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 CACNB3P54284 484 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 GNL2Q13823 731 aaKnown RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 DCTN1Q14203 1278 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 NTRK3Q16288 839 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 PROSER3Q2NL68 480 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 CCDC144BQ3MJ40 725 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 EGFLAMQ63HQ2 1017 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 CCDC174Q6PII3 467 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 ZNF365Q70YC5 407 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 ADGRE4PQ86SQ3 457 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 SGMS1Q86VZ5 419 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms