RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 AP3B2Q13367 1082 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 CYP1B1Q16678 543 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 PPP1R21Q6ZMI0 780 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 OTOP1Q7RTM1 612 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 CBWD2Q8IUF1 395 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 CDAN1Q8IWY9 1227 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 TEKT4Q8WW24 435 aa19.48■□□□□ 0.71
UPF1-210ENST00000600689 IFNB1P01574 187 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 CYP3A4P08684 503 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 ARP10275 920 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 CYP11B1P15538 503 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 SREBF1P36956 1147 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 MAGEA4P43358 317 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 NOP14P78316 857 aaKnown RBP19.47■□□□□ 0.71
UPF1-210ENST00000600689 Q4G0T1 1027 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 ATP13A4Q4VNC1 1196 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 RHBDF2Q6PJF5 856 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 STXBP4Q6ZWJ1 553 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 LXNQ9BS40 222 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 MKNK1Q9BUB5 465 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 ZBTB12Q9Y330 459 aaPredicted RBP19.47■□□□□ 0.71
UPF1-210ENST00000600689 NEFHP12036 1026 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 PLS3P13797 630 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 KHDC1Q4VXA5 237 aaKnown RBP19.47■□□□□ 0.71
UPF1-210ENST00000600689 PSPC1Q8WXF1 523 aaKnown RBP19.47■□□□□ 0.71
UPF1-210ENST00000600689 DNAJC9Q8WXX5 260 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 SH3GL3Q99963 347 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 TRAIPQ9BWF2 469 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 NOCTQ9UK39 431 aaKnown RBP19.47■□□□□ 0.71
UPF1-210ENST00000600689 SCAF8Q9UPN6 1271 aaKnown RBP19.47■□□□□ 0.71
UPF1-210ENST00000600689 USH1CQ9Y6N9 552 aa19.47■□□□□ 0.71
UPF1-210ENST00000600689 T-ENOLP0DO92 83 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 GNAZP19086 355 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 ZNF772Q68DY9 489 aaPredicted RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 SLC7A6OSQ96CW6 309 aaPredicted RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 MBOAT7Q96N66 472 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 POLR3CQ9BUI4 534 aaPredicted RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 DCLK3Q9C098 648 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 C10orf88Q9H8K7 445 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 DMAC2Q9NW81 257 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 ZFP69BQ9UJL9 534 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 SLC16A4O15374 487 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 ATF7P17544 494 aaPredicted RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 ALDH3A1P30838 453 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 CPA2P48052 419 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 FKBP1AP62942 108 aaKnown RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 SEPT7Q16181 437 aaKnown RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 SLC30A9Q6PML9 568 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 DSTYKQ6XUX3 929 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 ZC3H18Q86VM9 953 aaKnown RBP19.46■□□□□ 0.71
UPF1-210ENST00000600689 HSPBP1Q9NZL4 362 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 NUMBLQ9Y6R0 609 aa19.46■□□□□ 0.71
UPF1-210ENST00000600689 FGFR1P11362 822 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 PIK3CAP42336 1068 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 RCN2Q14257 317 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 SYDE2Q5VT97 1194 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 PCNX4Q63HM2 1172 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 ACER1Q8TDN7 264 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 FHDC1Q9C0D6 1143 aaPredicted RBP19.45■□□□□ 0.7
UPF1-210ENST00000600689 A6NHS1 94 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 ADRB2P07550 413 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 HMGB2P26583 209 aaKnown RBP19.45■□□□□ 0.7
UPF1-210ENST00000600689 SLC15A2Q16348 729 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 EAPPQ56P03 285 aaPredicted RBP19.45■□□□□ 0.7
UPF1-210ENST00000600689 SCYL3Q8IZE3 742 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 SMC6Q96SB8 1091 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 DDX50Q9BQ39 737 aaKnown RBP19.45■□□□□ 0.7
UPF1-210ENST00000600689 PLVAPQ9BX97 442 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 UNC45AQ9H3U1 944 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 KIAA1586Q9HCI6 787 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 PAPOLBQ9NRJ5 636 aaKnown RBP19.45■□□□□ 0.7
UPF1-210ENST00000600689 FSCN2O14926 492 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 KRT36O76013 467 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 PLCB3Q01970 1234 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 SPARCL1Q14515 664 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 RCN1Q15293 331 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 SYCP2LQ5T4T6 812 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 LVRNQ6Q4G3 990 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 PADI6Q6TGC4 694 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 DAW1Q8N136 415 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 CRYGNQ8WXF5 182 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 PRR11Q96HE9 360 aaPredicted RBP19.45■□□□□ 0.7
UPF1-210ENST00000600689 ZNF577Q9BSK1 485 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 LRMDAQ9H2I8 198 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 USP20Q9Y2K6 914 aa19.45■□□□□ 0.7
UPF1-210ENST00000600689 EFTUD2Q15029 972 aaKnown RBP eCLIP19.44■□□□□ 0.76e-6■■□□□ 12.5
UPF1-210ENST00000600689 TSNAXIP1Q2TAA8 658 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 ARMC3Q5W041 872 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 NLRP9Q7RTR0 991 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 ANKS1BQ7Z6G8 1248 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 CCDC125Q86Z20 511 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 ZBED8Q8IZ13 594 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 TAS1R2Q8TE23 839 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.44■□□□□ 0.7
UPF1-210ENST00000600689 ZNF148Q9UQR1 794 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 C2CD2Q9Y426 696 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 TBX3O15119 743 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 ZBTB16Q05516 673 aa19.44■□□□□ 0.7
UPF1-210ENST00000600689 MKRN3Q13064 507 aaKnown RBP19.44■□□□□ 0.7
UPF1-210ENST00000600689 MDH1BQ5I0G3 518 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms