RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PDCD11Q14690 1871 aaKnown RBP16.48■□□□□ 0.23
LIG1-219ENST00000600055 ANO9A1A5B4 782 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 FSD2A1L4K1 749 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 GRXCR2A6NFK2 248 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 MBTPS2O43462 519 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 ADH1AP07327 375 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 IL9P15248 144 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 SNRNP35Q16560 246 aaKnown RBP16.47■□□□□ 0.23
LIG1-219ENST00000600055 PALB2Q86YC2 1186 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 C12orf56Q8IXR9 622 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 GPR65Q8IYL9 337 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 C12orf76Q8N812 135 aaPredicted RBP16.47■□□□□ 0.23
LIG1-219ENST00000600055 XXYLT1Q8NBI6 393 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 FEZF2Q8TBJ5 459 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 CASP10Q92851 521 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 SMARCE1Q969G3 411 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 SUSD3Q96L08 255 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 CLSTN3Q9BQT9 956 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 KIAA1586Q9HCI6 787 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIG1-219ENST00000600055 FNIP2Q9P278 1114 aa16.47■□□□□ 0.23
LIG1-219ENST00000600055 CGNQ9P2M7 1197 aaKnown RBP16.47■□□□□ 0.23
LIG1-219ENST00000600055 PTPRJQ12913 1337 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 PIRO00625 290 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 PDXKO00764 312 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 SPTLC1O15269 473 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 EXOC3O60645 756 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 SMC2O95347 1197 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 SPATA31D3P0C874 917 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 SRGAP2BP0DMP2 458 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 ISM2Q6H9L7 571 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 RSPO2Q6UXX9 243 aaPredicted RBP16.46■□□□□ 0.23
LIG1-219ENST00000600055 CLEC17AQ6ZS10 378 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 SPATA31D4Q6ZUB0 917 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 PPFIBP1Q86W92 1011 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 ELOA2Q8IYF1 753 aaPredicted RBP16.46■□□□□ 0.23
LIG1-219ENST00000600055 GUF1Q8N442 669 aaKnown RBP16.46■□□□□ 0.23
LIG1-219ENST00000600055 SMRP1Q8NCR6 262 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 SPATA20Q8TB22 786 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 GOLGA5Q8TBA6 731 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 GSDMAQ96QA5 445 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 S1PR5Q9H228 398 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 DMAC2Q9NW81 257 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 CDH22Q9UJ99 828 aa16.46■□□□□ 0.23
LIG1-219ENST00000600055 HOOK1Q9UJC3 728 aaKnown RBP16.46■□□□□ 0.23
LIG1-219ENST00000600055 TIMM13Q9Y5L4 95 aaPredicted RBP16.46■□□□□ 0.23
LIG1-219ENST00000600055 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.46■□□□□ 0.23
LIG1-219ENST00000600055 TGM5O43548 720 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 KIF20AO95235 890 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 NR3C1P04150 777 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 AARSP49588 968 aaKnown RBP eCLIP16.45■□□□□ 0.22
LIG1-219ENST00000600055 LILRA4P59901 499 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 CYP24A1Q07973 514 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 SMAD4Q13485 552 aaKnown RBP16.45■□□□□ 0.22
LIG1-219ENST00000600055 VARS2Q5ST30 1063 aaKnown RBP16.45■□□□□ 0.22
LIG1-219ENST00000600055 NT5DC4Q86YG4 428 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 C1orf127Q8N9H9 656 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 OR5B17Q8NGF7 314 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 NECAB3Q96P71 396 aaPredicted RBP16.45■□□□□ 0.22
LIG1-219ENST00000600055 POP1Q99575 1024 aaKnown RBP16.45■□□□□ 0.22
LIG1-219ENST00000600055 MTMR12Q9C0I1 747 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 RMND1Q9NWS8 449 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 MTRRQ9UBK8 725 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 MAN1B1Q9UKM7 699 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 PCDHB8Q9UN66 801 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 ANK1P16157 1881 aa16.45■□□□□ 0.22
LIG1-219ENST00000600055 M0QZQ0 153 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 SYN3O14994 580 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 CALUO43852 315 aaPredicted RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 GLUD1P00367 558 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 ITGB3P05106 788 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 DLATP10515 647 aaKnown RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 POLR2BP30876 1174 aaKnown RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 OR1D2P34982 312 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 PRCPP42785 496 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 CASP4P49662 377 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 CREMQ03060 361 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 MRPL58Q14197 206 aaKnown RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 PSMD6Q15008 389 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 PUS10Q3MIT2 529 aaKnown RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 RARS2Q5T160 578 aaKnown RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 ZNF658Q5TYW1 1059 aaPredicted RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 PDXDC1Q6P996 788 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 LILRA6Q6PI73 481 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 DSTYKQ6XUX3 929 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 ANKS3Q6ZW76 656 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 SLC9A9Q8IVB4 645 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 CXorf38Q8TB03 319 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 PLEKHO2Q8TD55 490 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 ADAMTS19Q8TE59 1207 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 CACTINQ8WUQ7 758 aaKnown RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 CCDC127Q96BQ5 260 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 SENP8Q96LD8 212 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 MFSD14AQ96MC6 490 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 COL25A1Q9BXS0 654 aaPredicted RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 GZF1Q9H116 711 aaPredicted RBP16.44■□□□□ 0.22
LIG1-219ENST00000600055 MAN1C1Q9NR34 630 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 INTS13Q9NVM9 706 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 SIX4Q9UIU6 781 aa16.44■□□□□ 0.22
LIG1-219ENST00000600055 AGAP1Q9UPQ3 857 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms