RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CLSTN3Q9BQT9 956 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 PLEKHA4Q9H4M7 779 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 FBXW11Q9UKB1 542 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 NUB1Q9Y5A7 615 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 PCDHB13Q9Y5F0 798 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 TSC2P49815 1807 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 PROB1E7EW31 1015 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 SYN3O14994 580 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 POLR2DO15514 142 aaKnown RBP16.42■□□□□ 0.22
TRIM28-205ENST00000595028 PAPLNO95428 1278 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 SPATA31D3P0C874 917 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 SP100P23497 879 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-205ENST00000595028 ADSSP30520 456 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 LRPAP1P30533 357 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 ASIC1P78348 528 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 KRT85P78386 507 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 AMPD3Q01432 767 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 SIGLEC14Q08ET2 396 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 ZBTB6Q15916 424 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 CNNM4Q6P4Q7 775 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 LILRA6Q6PI73 481 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 SPATA31D4Q6ZUB0 917 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 CD302Q8IX05 232 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 KREMEN2Q8NCW0 462 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 LEO1Q8WVC0 666 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-205ENST00000595028 ASIC4Q96FT7 647 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 CHAMP1Q96JM3 812 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 TSPAN18Q96SJ8 248 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 RHOBTB2Q9BYZ6 727 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 AGO2Q9UKV8 859 aaKnown RBP16.42■□□□□ 0.22
TRIM28-205ENST00000595028 NR2E1Q9Y466 385 aa16.42■□□□□ 0.22
TRIM28-205ENST00000595028 C2CD4DB7Z1M9 353 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 ADAM12O43184 909 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 XPOTO43592 962 aaKnown RBP16.41■□□□□ 0.22
TRIM28-205ENST00000595028 RFPL2O75678 378 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 NFICP08651 508 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 MCM4P33991 863 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 ACOT2P49753 483 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 POSTNQ15063 836 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 CYP26C1Q6V0L0 522 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 CCDC149Q6ZUS6 474 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 ANKS3Q6ZW76 656 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 TMEM130Q8N3G9 435 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 POMGNT1Q8WZA1 660 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 ZNF707Q96C28 371 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-205ENST00000595028 SUSD3Q96L08 255 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 PYM1Q9BRP8 204 aaKnown RBP16.41■□□□□ 0.22
TRIM28-205ENST00000595028 TSHZ2Q9NRE2 1034 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 ZDHHC7Q9NXF8 308 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 BACE2Q9Y5Z0 518 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 CDY1Q9Y6F8 540 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 GVINP1Q7Z2Y8 2422 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 DOCK8Q8NF50 2099 aa16.41■□□□□ 0.22
TRIM28-205ENST00000595028 DMXL1Q9Y485 3027 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 PRPF6O94906 941 aaKnown RBP16.4■□□□□ 0.22
TRIM28-205ENST00000595028 GUCY2FP51841 1108 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 POU5F1Q01860 360 aaKnown RBP16.4■□□□□ 0.22
TRIM28-205ENST00000595028 RAB33AQ14088 237 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 VARS2Q5ST30 1063 aaKnown RBP16.4■□□□□ 0.22
TRIM28-205ENST00000595028 LIN9Q5TKA1 542 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 JADE1Q6IE81 842 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 RSPO2Q6UXX9 243 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-205ENST00000595028 STXBP4Q6ZWJ1 553 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 SYCP3Q8IZU3 236 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 TDRD5Q8NAT2 981 aaKnown RBP16.4■□□□□ 0.22
TRIM28-205ENST00000595028 GLIS3Q8NEA6 775 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 HPS3Q969F9 1004 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 FAM212AQ96EL1 285 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 SPATA32Q96LK8 384 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 C7orf25Q9BPX7 421 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 ASB7Q9H672 318 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 KCNH3Q9ULD8 1083 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 USTQ9Y2C2 406 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 DERAQ9Y315 318 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 ATP6V1DQ9Y5K8 247 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 SCN1AP35498 2009 aa16.4■□□□□ 0.22
TRIM28-205ENST00000595028 CCDC195A0A1B0GUA6 201 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 PRR23AA6NEV1 266 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 ZMYND10O75800 440 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 OR1D2P34982 312 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 AARSP49588 968 aaKnown RBP eCLIP16.39■□□□□ 0.21
TRIM28-205ENST00000595028 TMEM132DQ14C87 1099 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 FAM26FQ5R3K3 315 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 SPATA1Q5VX52 437 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 CRELD2Q6UXH1 353 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-205ENST00000595028 UNC13DQ70J99 1090 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 BEST2Q8NFU1 509 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 SMG7Q92540 1137 aaKnown RBP16.39■□□□□ 0.21
TRIM28-205ENST00000595028 TMEM206Q9H813 350 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 C2CD2Q9Y426 696 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 DOCK6Q96HP0 2047 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 MYO10Q9HD67 2058 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 CLUHO75153 1309 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 ZNF292O60281 2723 aa16.39■□□□□ 0.21
TRIM28-205ENST00000595028 DNAH14Q0VDD8 3507 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 CACNA1BQ00975 2339 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 PPEF2O14830 753 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 EIF3DO15371 548 aaKnown RBP eCLIP16.38■□□□□ 0.21
TRIM28-205ENST00000595028 ACTN4O43707 911 aaKnown RBP16.38■□□□□ 0.21
TRIM28-205ENST00000595028 C8AP07357 584 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms