RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 ATP2B1P20020 1258 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 HOXC13P31276 330 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 NAMPTP43490 491 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 SOX9P48436 509 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 LIMK1P53667 647 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 EPHA5P54756 1037 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 MLLT6P55198 1093 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-202ENST00000588059 ARPP19P56211 112 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 LRRC32Q14392 662 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 CYP4A22Q5TCH4 519 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 IL31Q6EBC2 164 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 MFSD6LQ8IWD5 586 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 RSPRY1Q96DX4 576 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 MSANTD3Q96H12 275 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 KIFC3Q9BVG8 833 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 CEP72Q9P209 647 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 FBXL5Q9UKA1 691 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 CYP46A1Q9Y6A2 500 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 EML5Q05BV3 1969 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 FRYQ5TBA9 3013 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 SLC38A8A6NNN8 435 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 HEPACAM2A8MVW5 462 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 PODXLO00592 558 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 SYN3O14994 580 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 MYL4P12829 197 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 TXKP42681 527 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 SCRN1Q12765 414 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 TWF1Q12792 350 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 MRPL58Q14197 206 aaKnown RBP12.13□□□□□ -0.47
VPS4B-202ENST00000588059 SF3A2Q15428 464 aaKnown RBP12.13□□□□□ -0.47
VPS4B-202ENST00000588059 TEAD2Q15562 447 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 AASDHQ4L235 1098 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-202ENST00000588059 NT5DC1Q5TFE4 455 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 TPGS2Q68CL5 300 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 IQCEQ6IPM2 695 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 TXNDC11Q6PKC3 985 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 CEP68Q76N32 757 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 ELMOD1Q8N336 334 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 DEPTORQ8TB45 409 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 SHKBP1Q8TBC3 707 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 MTMR9Q96QG7 549 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 RXFP3Q9NSD7 469 aa12.13□□□□□ -0.47
VPS4B-202ENST00000588059 H7C4K7 107 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 EPB41L2O43491 1005 aaKnown RBP12.12□□□□□ -0.47
VPS4B-202ENST00000588059 NEMFO60524 1076 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 MED24O75448 989 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 HOXA6P31267 233 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CTHP32929 405 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 KRT2P35908 639 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 FCHO2Q0JRZ9 810 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CCDC6Q16204 474 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CTXN3Q4LDR2 81 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 XKR4Q5GH76 650 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 ATF7IP2Q5U623 682 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 C1orf228Q6PIY5 440 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 PADI6Q6TGC4 694 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 WDR5BQ86VZ2 330 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CATSPER3Q86XQ3 398 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CEP120Q8N960 986 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 LEMD2Q8NC56 503 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CSGALNACT1Q8TDX6 532 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 ZNF512Q96ME7 567 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-202ENST00000588059 C8orf33Q9H7E9 229 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-202ENST00000588059 TUFT1Q9NNX1 390 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 ASAH2Q9NR71 780 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 AFF4Q9UHB7 1163 aaKnown RBP12.12□□□□□ -0.47
VPS4B-202ENST00000588059 ATRXP46100 2492 aa12.12□□□□□ -0.47
VPS4B-202ENST00000588059 CEP295Q9C0D2 2601 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 MYBPHLA2RUH7 354 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 SPECC1L-ADORA2AF8WAN1 911 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 CHADO15335 359 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 CYP11B2P19099 503 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 GRM5P41594 1212 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 KPNA1P52294 538 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-202ENST00000588059 EFNA5P52803 228 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 PPP2R5AQ15172 486 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 DGKKQ5KSL6 1271 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 ZNF280DQ6N043 979 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 ALKAL1Q6UXT8 129 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 YAF2Q8IY57 180 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 C12orf50Q8NA57 414 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-202ENST00000588059 E2F7Q96AV8 911 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 SUSD3Q96L08 255 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 ZMAT2Q96NC0 199 aaKnown RBP12.11□□□□□ -0.47
VPS4B-202ENST00000588059 TM6SF1Q9BZW5 370 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 GPR88Q9GZN0 384 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 CDT1Q9H211 546 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 ARRDC1-AS1Q9H2J1 176 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 SLITRK6Q9H5Y7 841 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 TOPORSQ9NS56 1045 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-202ENST00000588059 SLC38A7Q9NVC3 462 aa12.11□□□□□ -0.47
VPS4B-202ENST00000588059 DAXXQ9UER7 740 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-202ENST00000588059 ARHGEF35A5YM69 484 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 AXIN1O15169 862 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 EPN2O95208 641 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 CTDNEP1O95476 244 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 PROS1P07225 676 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 ZNF806P0C7X5 589 aa12.1□□□□□ -0.47
VPS4B-202ENST00000588059 YARSP54577 528 aaKnown RBP12.1□□□□□ -0.47
VPS4B-202ENST00000588059 CCINQ13939 588 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms