RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 ZACNQ401N2 412 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 SEZ6Q53EL9 994 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 TAF3Q5VWG9 929 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 PPP1R2P3Q6NXS1 205 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 CATSPER4Q7RTX7 472 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 RSPH3Q86UC2 560 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 FAM71AQ8IYT1 594 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 DHX38Q92620 1227 aaKnown RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 TATDN2Q93075 761 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 ACAP3Q96P50 834 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 PI4K2AQ9BTU6 479 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 CCDC94Q9BW85 323 aaPredicted RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 TRIM6Q9C030 488 aaPredicted RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 DNAI2Q9GZS0 605 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.96□□□□□ -0.82
SS18-220ENST00000582092 AJAP1Q9UKB5 411 aaPredicted RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 V9GYY5 206 aaPredicted RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 MYO9BQ13459 2157 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 A0A0A6YYK5 440 aaPredicted RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 DDX3XO00571 662 aaKnown RBP eCLIP9.95□□□□□ -0.82
SS18-220ENST00000582092 PALMO75781 387 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 PARNO95453 639 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 ATP1A1P05023 1023 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 GZMAP12544 262 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 HOXD8P13378 290 aaPredicted RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 PRLRP16471 622 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 ABCB4P21439 1286 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 GALCP54803 685 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 RBM10P98175 930 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 POU5F1Q01860 360 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 RPS6KA1Q15418 735 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 PTGISQ16647 500 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 DCAF4L1Q3SXM0 396 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 TDRD10Q5VZ19 366 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 PAPD7Q5XG87 772 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 CRELD2Q6UXH1 353 aaPredicted RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 TRAPPC11Q7Z392 1133 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 SESTD1Q86VW0 696 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 ZNF677Q86XU0 584 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 IFNLR1Q8IU57 520 aaPredicted RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 CD302Q8IX05 232 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 KIAA0319LQ8IZA0 1049 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 NME8Q8N427 588 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 GPR161Q8N6U8 529 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 SHC3Q92529 594 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 ZNF516Q92618 1163 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 CAPZA3Q96KX2 299 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 TRPV6Q9H1D0 765 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 IL23AQ9NPF7 189 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 CTTNBP2NLQ9P2B4 639 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 CPSF3Q9UKF6 684 aaKnown RBP9.95□□□□□ -0.82
SS18-220ENST00000582092 AMFRQ9UKV5 643 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 ATP8B3O60423 1300 aa9.95□□□□□ -0.82
SS18-220ENST00000582092 DNAH12Q6ZR08 3092 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 GRIN2DO15399 1336 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 CNTNAP2Q9UHC6 1331 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.94□□□□□ -0.82
SS18-220ENST00000582092 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.94□□□□□ -0.82
SS18-220ENST00000582092 ANKRD62A6NC57 917 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 PITPNM1O00562 1244 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 B4GALT5O43286 388 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 F2P00734 622 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 FGBP02675 491 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 FTLP02792 175 aaPredicted RBP9.94□□□□□ -0.82
SS18-220ENST00000582092 RPLP2P05387 115 aaKnown RBP9.94□□□□□ -0.82
SS18-220ENST00000582092 TUBBP07437 444 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 TMEM253P0C7T8 217 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 STAG3L1P0CL83 205 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 CSF2RAP15509 400 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 CYP11B1P15538 503 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 MCM3P25205 808 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 ITGB8P26012 769 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 AXLP30530 894 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 CYP2C18P33260 490 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 RFC2P35250 354 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 TNFSF9P41273 254 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 NOP14P78316 857 aaKnown RBP9.94□□□□□ -0.82
SS18-220ENST00000582092 GPC5P78333 572 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 SMAD3P84022 425 aaKnown RBP9.94□□□□□ -0.82
SS18-220ENST00000582092 CUL2Q13617 745 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 ELF2Q15723 593 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 KIZQ2M2Z5 673 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 ERCC6LQ2NKX8 1250 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 ZNF699Q32M78 642 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 ZNF697Q5TEC3 545 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 LIN9Q5TKA1 542 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 NOTUMQ6P988 496 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 TRIM72Q6ZMU5 477 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 C15orf39Q6ZRI6 1047 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 PEX26Q7Z412 305 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 DAAM2Q86T65 1068 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 RHOT2Q8IXI1 618 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 PDCL2Q8N4E4 241 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 HELQQ8TDG4 1101 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 UBE2Q2Q8WVN8 375 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 RABGGTAQ92696 567 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 ZBTB10Q96DT7 871 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 TRIM11Q96F44 468 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 CPB2Q96IY4 423 aa9.94□□□□□ -0.82
SS18-220ENST00000582092 PACSIN1Q9BY11 444 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms