RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CALCAP01258 141 aa27■■□□□ 1.91
SHMT1-207ENST00000580002 ACRP10323 421 aa27■■□□□ 1.91
SHMT1-207ENST00000580002 RAG1P15918 1043 aa27■■□□□ 1.91
SHMT1-207ENST00000580002 NT5DC4Q86YG4 428 aa27■■□□□ 1.91
SHMT1-207ENST00000580002 UBQLN1Q9UMX0 589 aaKnown RBP27■■□□□ 1.91
SHMT1-207ENST00000580002 ALPK3Q96L96 1907 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 F8VZ95 297 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 GFPT2O94808 682 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 SGSM1Q2NKQ1 1148 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 ZNF699Q32M78 642 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 HACE1Q8IYU2 909 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 BEST2Q8NFU1 509 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 IQCDQ96DY2 449 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 ACP6Q9NPH0 428 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 SFMBT2Q5VUG0 894 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 C9orf57Q5W0N0 161 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 HGSNATQ68CP4 663 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 RAD9BQ6WBX8 426 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 SCARA5Q6ZMJ2 495 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 IRF2BP2Q7Z5L9 587 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 PGBD4Q96DM1 585 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 PAAF1Q9BRP4 392 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 C1orf112Q9NSG2 853 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 NXF1Q9UBU9 619 aaKnown RBP26.99■■□□□ 1.91
SHMT1-207ENST00000580002 ITGA11Q9UKX5 1188 aa26.99■■□□□ 1.91
SHMT1-207ENST00000580002 B4GALT3O60512 393 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 ZC3H11AO75152 810 aaKnown RBP eCLIP26.98■■□□□ 1.91
SHMT1-207ENST00000580002 FECHP22830 423 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 RBP5P82980 135 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 MEA1Q16626 185 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 C17orf53Q8N3J3 647 aaPredicted RBP26.98■■□□□ 1.91
SHMT1-207ENST00000580002 APBB2Q92870 758 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 HPDLQ96IR7 371 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 RPS6KC1Q96S38 1066 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 ARHGAP20Q9P2F6 1191 aa26.98■■□□□ 1.91
SHMT1-207ENST00000580002 SCN1AP35498 2009 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 SKIP12755 728 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 HNRNPH3P31942 346 aaKnown RBP26.97■■□□□ 1.91
SHMT1-207ENST00000580002 RAP1GAPP47736 663 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 WDR72Q3MJ13 1102 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 PDCD11Q14690 1871 aaKnown RBP26.97■■□□□ 1.91
SHMT1-207ENST00000580002 ANO9A1A5B4 782 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 SPTLC1O15269 473 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 EOMESO95936 686 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 THP07101 528 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 WEE2P0C1S8 567 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 MFAP3P55082 362 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 CDH8P55286 799 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 CUL2Q13617 745 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 HS1BP3Q53T59 392 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 MFSD5Q6N075 450 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 TMCO2Q7Z6W1 182 aaPredicted RBP26.97■■□□□ 1.91
SHMT1-207ENST00000580002 C7orf61Q8IZ16 206 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 CRIPAKQ8N1N5 446 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 SDCBP2Q9H190 292 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 AIPL1Q9NZN9 384 aa26.97■■□□□ 1.91
SHMT1-207ENST00000580002 PIRO00625 290 aa26.96■■□□□ 1.91
SHMT1-207ENST00000580002 PARNO95453 639 aaKnown RBP26.96■■□□□ 1.91
SHMT1-207ENST00000580002 SOX5P35711 763 aa26.96■■□□□ 1.91
SHMT1-207ENST00000580002 USP8P40818 1118 aa26.96■■□□□ 1.91
SHMT1-207ENST00000580002 ASPAP45381 313 aa26.96■■□□□ 1.91
SHMT1-207ENST00000580002 CASTOR2A6NHX0 329 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 ACO1P21399 889 aaKnown RBP26.95■■□□□ 1.9
SHMT1-207ENST00000580002 STAT1P42224 750 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 GCNT1Q02742 428 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 C16orf59Q7L2K0 433 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 SHC3Q92529 594 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 ABHD8Q96I13 439 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 IMPG2Q9BZV3 1241 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 TMEM161AQ9NX61 479 aa26.95■■□□□ 1.9
SHMT1-207ENST00000580002 EVI5O60447 810 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 SYN1P17600 705 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 ASIC2Q16515 512 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 CNKSR3Q6P9H4 555 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 ZNF280BQ86YH2 543 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 NIF3L1Q9GZT8 377 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 SMYD3Q9H7B4 428 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 HCSTQ9UBK5 93 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 PCDHB7Q9Y5E2 793 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 CYP26A1O43174 497 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 CD58P19256 250 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 CLCN1P35523 988 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 CLCNKBP51801 687 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 TSR1Q2NL82 804 aaKnown RBP26.94■■□□□ 1.9
SHMT1-207ENST00000580002 BADQ92934 168 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 HAUS4Q9H6D7 363 aa26.94■■□□□ 1.9
SHMT1-207ENST00000580002 FAM170AA1A519 330 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 F8W810 466 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 DDHD2O94830 711 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 UPP2O95045 317 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 CYP3A5P20815 502 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 EIF4A3P38919 411 aaKnown RBP26.93■■□□□ 1.9
SHMT1-207ENST00000580002 ZNF667Q5HYK9 610 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 TOGARAM2Q6ZUX3 1019 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 FAM71AQ8IYT1 594 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 UBR7Q8N806 425 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 C3orf58Q8NDZ4 430 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 SYN2Q92777 582 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-207ENST00000580002 NHEJ1Q9H9Q4 299 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-207ENST00000580002 UBN1Q9NPG3 1134 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms