RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 KRT85P78386 507 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 HTRA3P83110 453 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 FAM47CQ5HY64 1035 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 SPECC1Q5M775 1068 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 MROH9Q5TGP6 573 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 CST9Q5W186 159 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 CHST15Q7LFX5 561 aaPredicted RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 ARMC9Q7Z3E5 817 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 CATIPQ7Z7H3 387 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 ATG4DQ86TL0 474 aaPredicted RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 DZIP1Q86YF9 867 aaKnown RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 OR8H2Q8N162 312 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 CBARPQ8N350 705 aaPredicted RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 TRIM63Q969Q1 353 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 FBXW5Q969U6 566 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 GCC1Q96CN9 775 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 KIF1BPQ96EK5 621 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PRMT6Q96LA8 375 aaPredicted RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 JAM3Q9BX67 310 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 IPPKQ9H8X2 491 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 VEZTQ9HBM0 779 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 CATSPERZQ9NTU4 200 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PPARGC1AQ9UBK2 798 aaKnown RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 ABCF2Q9UG63 623 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 ADGRE2Q9UHX3 823 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PTPN22Q9Y2R2 807 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PCDHGB3Q9Y5G1 929 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 FPGT-TNNI3KV9GXZ4 949 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PCNTO95613 3336 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 PDS5AQ29RF7 1337 aaKnown RBP6.95□□□□□ -1.3
VPS53-212ENST00000572259 ITIH6Q6UXX5 1313 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 SALL1Q9NSC2 1324 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 CNTNAP1P78357 1384 aa6.95□□□□□ -1.3
VPS53-212ENST00000572259 A0A1B0GVC2 190 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 hCG_1642624A0A1W2PR95 340 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 ADM5C9JUS6 153 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 PRKD3O94806 890 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 GNAT1P11488 350 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 ADORA1P30542 326 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 MAP2K2P36507 400 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 DNM2P50570 870 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 RRP1P56182 461 aaKnown RBP6.94□□□□□ -1.3
VPS53-212ENST00000572259 GSTO1P78417 241 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 MAP2K1Q02750 393 aaPredicted RBP6.94□□□□□ -1.3
VPS53-212ENST00000572259 SPIRE1Q08AE8 756 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 FAPQ12884 760 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 PRR16Q569H4 304 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 OTOP3Q7RTS5 596 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 CHCHD4Q8N4Q1 142 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 PCDH19Q8TAB3 1148 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 PLEKHO2Q8TD55 490 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 CDCA5Q96FF9 252 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 ZBED3Q96IU2 234 aaPredicted RBP6.94□□□□□ -1.3
VPS53-212ENST00000572259 PAWRQ96IZ0 340 aaKnown RBP6.94□□□□□ -1.3
VPS53-212ENST00000572259 NOL10Q9BSC4 688 aaKnown RBP6.94□□□□□ -1.3
VPS53-212ENST00000572259 RNF32Q9H0A6 362 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 DEFB129Q9H1M3 183 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 EPB41L1Q9H4G0 881 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 TTLL3Q9Y4R7 772 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 X6R8D5 127 aa6.94□□□□□ -1.3
VPS53-212ENST00000572259 WDR33Q9C0J8 1336 aaKnown RBP6.94□□□□□ -1.3
VPS53-212ENST00000572259 COL1A1P02452 1464 aaPredicted RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 ZNF646O15015 1829 aaPredicted RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 CLRN2A0PK11 232 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 A6NCN8 305 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 NTRK1P04629 796 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 JMJD7P0C870 316 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 FAM200BP0CF97 657 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 RHCEP18577 417 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 MAPK9P45984 424 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 TM4SF4P48230 202 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 RHDQ02161 417 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 PRKG2Q13237 762 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 NOGQ13253 232 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 GRM1Q13255 1194 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 ZNF460Q14592 562 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 KCNMB1Q16558 191 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 INAVAQ3KP66 663 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 INTS11Q5TA45 600 aaKnown RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 FKBP1CQ5VVH2 108 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 FYB2Q5VWT5 728 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 IQSEC1Q6DN90 963 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 RGMBQ6NW40 437 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 NKAIN3Q8N8D7 197 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS53-212ENST00000572259 RSPH1Q8WYR4 309 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 GOLGA1Q92805 767 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 SHISA4Q96DD7 197 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 WNK4Q96J92 1243 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 CAPNS2Q96L46 248 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 LRGUKQ96M69 825 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 NAA15Q9BXJ9 866 aaKnown RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 OSBPL5Q9H0X9 879 aaPredicted RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 TDRD3Q9H7E2 651 aaKnown RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 SAMD15Q9P1V8 674 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 ZNF70Q9UC06 446 aaPredicted RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 DBR1Q9UK59 544 aaKnown RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 EXOC6BQ9Y2D4 811 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 YBX2Q9Y2T7 364 aaKnown RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 COQ6Q9Y2Z9 468 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms