RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RASSF9O75901 435 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 PIGRP01833 764 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 RALAP11233 206 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 POLGP54098 1239 aaPredicted RBP24.25■■□□□ 1.47
VPS53-211ENST00000571805 HMGCS2P54868 508 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 TAS2R40P59535 323 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 MAMLD1Q13495 774 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 TAOK1Q7L7X3 1001 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 ZNF526Q8TF50 670 aaPredicted RBP24.25■■□□□ 1.47
VPS53-211ENST00000571805 P3H4Q92791 437 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 C12orf42Q96LP6 360 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 SERPINB12Q96P63 405 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 C11orf70Q9BRQ4 267 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 HEMGNQ9BXL5 484 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 AS3MTQ9HBK9 375 aa24.25■■□□□ 1.47
VPS53-211ENST00000571805 ATP2A1O14983 1001 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 TTC4O95801 387 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 GAS8O95995 478 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 GLRA2P23416 452 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 ZBTB41Q5SVQ8 909 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 TRIM72Q6ZMU5 477 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 VCPIP1Q96JH7 1222 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 PORCNQ9H237 461 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 KDM4CQ9H3R0 1056 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 CNTN6Q9UQ52 1028 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 MAFBQ9Y5Q3 323 aaPredicted RBP24.24■■□□□ 1.47
VPS53-211ENST00000571805 PSTPIP1O43586 416 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 RPS12P25398 132 aaKnown RBP24.24■■□□□ 1.47
VPS53-211ENST00000571805 GNPTABQ3T906 1256 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 LIN9Q5TKA1 542 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 PLEKHA7Q6IQ23 1121 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 PHF13Q86YI8 300 aaPredicted RBP24.24■■□□□ 1.47
VPS53-211ENST00000571805 PASD1Q8IV76 773 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 CCDC197Q8NCU1 140 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 IPO4Q8TEX9 1081 aaKnown RBP24.24■■□□□ 1.47
VPS53-211ENST00000571805 DHX33Q9H6R0 707 aaKnown RBP24.24■■□□□ 1.47
VPS53-211ENST00000571805 RBAKQ9NYW8 714 aaPredicted RBP24.24■■□□□ 1.47
VPS53-211ENST00000571805 ADAM22Q9P0K1 906 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 PCDHB4Q9Y5E5 795 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 LCTP09848 1927 aa24.24■■□□□ 1.47
VPS53-211ENST00000571805 CAV1Q03135 178 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 TMEM270Q6UE05 265 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 RHOT1Q8IXI2 618 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 CCDC114Q96M63 670 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 TRAIPQ9BWF2 469 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 ACAD9Q9H845 621 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 HOMER3Q9NSC5 361 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 PIM2Q9P1W9 311 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 ATG7O95352 703 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 GNA15P30679 374 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 ARL2P36404 184 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 CCNG2Q16589 344 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 MICALL2Q8IY33 904 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 KATNAL2Q8IYT4 538 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 CEP89Q96ST8 783 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 TEX13BQ9BXU2 312 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 CCDC113Q9H0I3 377 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 ANAPC5Q9UJX4 755 aa24.23■■□□□ 1.47
VPS53-211ENST00000571805 CLTAP09496 248 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 GHRP10912 638 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 ATF2P15336 505 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 SSTR3P32745 418 aaPredicted RBP24.22■■□□□ 1.47
VPS53-211ENST00000571805 ADCY8P40145 1251 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 NAMPTP43490 491 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 SCTRP47872 440 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 KYNUQ16719 465 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 DCAF15Q66K64 600 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 SLFN12LQ6IEE8 588 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 ANKS1BQ7Z6G8 1248 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 CCDC50Q8IVM0 306 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 MRPL47Q9HD33 250 aaKnown RBP24.22■■□□□ 1.47
VPS53-211ENST00000571805 SLC40A1Q9NP59 571 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 NUB1Q9Y5A7 615 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 CNTNAP2Q9UHC6 1331 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 K7ERI5 159 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 OATP04181 439 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 EDN1P05305 212 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 GADD45GIP1Q8TAE8 222 aaPredicted RBP24.22■■□□□ 1.47
VPS53-211ENST00000571805 ARHGEF2Q92974 986 aaKnown RBP24.22■■□□□ 1.47
VPS53-211ENST00000571805 PWWP2AQ96N64 755 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 WRNIP1Q96S55 665 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 TARS2Q9BW92 718 aaKnown RBP24.22■■□□□ 1.47
VPS53-211ENST00000571805 OSBPL8Q9BZF1 889 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 ZNF302Q9NR11 478 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 PICK1Q9NRD5 415 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 FZD1Q9UP38 647 aa24.22■■□□□ 1.47
VPS53-211ENST00000571805 A0A0B4J269 797 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 CCT8L1PA6NM43 557 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 CATSPERGQ6ZRH7 1159 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 RBBP8NLQ8NC74 664 aaPredicted RBP24.21■■□□□ 1.47
VPS53-211ENST00000571805 OR5B17Q8NGF7 314 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 SCLT1Q96NL6 688 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 CGRRF1Q99675 332 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 DNAJC17Q9NVM6 304 aaKnown RBP24.21■■□□□ 1.47
VPS53-211ENST00000571805 ADGRA2Q96PE1 1338 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 LRRIQ4A6NIV6 560 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 LDHAP00338 332 aaKnown RBP24.21■■□□□ 1.47
VPS53-211ENST00000571805 CREB1P16220 341 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 IFNAR2P48551 515 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 GMPSP49915 693 aaPredicted RBP24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms