RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 MOV10L1Q9BXT6 1211 aaKnown RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 RANBP17Q9H2T7 1088 aaKnown RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 CORO1CQ9ULV4 474 aaPredicted RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 NID2Q14112 1375 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 MRC1P22897 1456 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 MYH2Q9UKX2 1941 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 LOC100653049A0A140TA62 436 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 NDC80O14777 642 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 KRT34O76011 436 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 NDUFB10O96000 172 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 ZSCAN5DPP0CG00 497 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 CYP11B1P15538 503 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 BNIP1Q12981 228 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 CDO1Q16878 200 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 ZNF720Q7Z2F6 126 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 AGR3Q8TD06 166 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 FAF2Q96CS3 445 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 GPRC5CQ9NQ84 441 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 CYP39A1Q9NYL5 469 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 AJAP1Q9UKB5 411 aaPredicted RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 BTNL10A8MVZ5 291 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 WDR64B1ANS9 1081 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 FAM86B1E9PN63 330 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 PAEPP09466 180 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 FAM86B2P0C5J1 330 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 CNGA1P29973 690 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 OSTNP61366 133 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 DLG4P78352 724 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 KPNB1Q14974 876 aaKnown RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 KLHL38Q2WGJ6 581 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 COBLL1Q53SF7 1204 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 ATG16L1Q676U5 607 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 SYDE1Q6ZW31 735 aaPredicted RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 FAM228AQ86W67 206 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 ECHDC2Q86YB7 292 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 RBBP8NLQ8NC74 664 aaPredicted RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 DCAF4Q8WV16 495 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 TOPORSQ9NS56 1045 aaPredicted RBP12.04□□□□□ -0.48
CLN3-238ENST00000569430 HEY1Q9Y5J3 304 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 SCINQ9Y6U3 715 aa12.04□□□□□ -0.48
CLN3-238ENST00000569430 GTPBP10A4D1E9 387 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 DDX3YO15523 660 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 SERPINB2P05120 415 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 ATXN3P54252 364 aaPredicted RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 DRG2P55039 364 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 MED21Q13503 144 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 SMTNL2Q2TAL5 461 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 NOP9Q86U38 636 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 AMIGO3Q86WK7 504 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 WDR75Q8IWA0 830 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLN3-238ENST00000569430 ARHGEF1Q92888 912 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 RTFDC1Q9BY42 306 aaPredicted RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 Q9H521 79 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 COG5Q9UP83 839 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 MYH13Q9UKX3 1938 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 MYO5AQ9Y4I1 1855 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 MYH15Q9Y2K3 1946 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 EIF3DO15371 548 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLN3-238ENST00000569430 ADRA1DP25100 572 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 POLR2BP30876 1174 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 RPA3P35244 121 aaPredicted RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 TFAMQ00059 246 aaKnown RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 BTKQ06187 659 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 MTERF2Q49AM1 385 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 ARHGEF16Q5VV41 709 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 C11orf63Q6NUN7 778 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 CPNE8Q86YQ8 564 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 TRIM42Q8IWZ5 723 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 FAM13CQ8NE31 585 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 HIC2Q96JB3 615 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 PPP1R1BQ9UD71 204 aaPredicted RBP12.03□□□□□ -0.48
CLN3-238ENST00000569430 ASTN1O14525 1302 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 MAGEA13PA6NCF6 341 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 KRT36O76013 467 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 MYL2P10916 166 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 SERPINB3P29508 390 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 TRIP10Q15642 601 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 MMEL1Q495T6 779 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 RNF220Q5VTB9 566 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 IZUMO2Q6UXV1 221 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 PCYOX1Q9UHG3 505 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 TMEM59LQ9UK28 342 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 RPTORQ8N122 1335 aa12.03□□□□□ -0.48
CLN3-238ENST00000569430 TBX3O15119 743 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 GJB6O95452 261 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 ACADSP16219 412 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 VCAM1P19320 739 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 SSTR1P30872 391 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 ACOT2P49753 483 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 PPATQ06203 517 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 ASPHQ12797 758 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 HSP90AA5PQ58FG0 334 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 OLFML2BQ68BL8 750 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 ACAD10Q6JQN1 1059 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 TMEM179Q6ZVK1 233 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 ZBTB33Q86T24 672 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 NME8Q8N427 588 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 LINC00116Q8NCU8 138 aa12.02□□□□□ -0.48
CLN3-238ENST00000569430 TAS1R2Q8TE23 839 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms