RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NDFIP2Q9NV92 336 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 GID8Q9NWU2 228 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 MYH4Q9Y623 1939 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 ADCY6O43306 1168 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 RNASEH1O60930 286 aaKnown RBP11.46□□□□□ -0.58
CLK3-226ENST00000569406 PABPC1P11940 636 aaKnown RBP11.46□□□□□ -0.58
CLK3-226ENST00000569406 CCNB1P14635 433 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 GRIA2P42262 883 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 ARL6IP4Q66PJ3 421 aaKnown RBP11.46□□□□□ -0.58
CLK3-226ENST00000569406 KLHDC10Q6PID8 442 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.46□□□□□ -0.58
CLK3-226ENST00000569406 SLC38A6Q8IZM9 456 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 BRSK1Q8TDC3 778 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 U2AF1L4Q8WU68 220 aaKnown RBP11.46□□□□□ -0.58
CLK3-226ENST00000569406 ACAP3Q96P50 834 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 CCDC28BQ9BUN5 200 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 DNAI2Q9GZS0 605 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 ZMYND12Q9H0C1 365 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 CCDC177Q9NQR7 707 aaPredicted RBP11.46□□□□□ -0.58
CLK3-226ENST00000569406 CLEC11AQ9Y240 323 aa11.46□□□□□ -0.58
CLK3-226ENST00000569406 MYH7BA7E2Y1 1941 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 TXNDC9O14530 226 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 RAD51CO43502 376 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 UFL1O94874 794 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 PPP2R5CQ13362 524 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 SPA17Q15506 151 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 SPATA1Q5VX52 437 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 RFWD3Q6PCD5 774 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 MIER3Q7Z3K6 550 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 RNF169Q8NCN4 708 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 CEP95Q96GE4 821 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 USP29Q9HBJ7 922 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 SH3PXD2BA1X283 911 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 FYNP06241 537 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 AP3M2P53677 418 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 TUBA4AP68366 448 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 AP1B1Q10567 949 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 TGFBIQ15582 683 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 C15orf59Q2T9L4 293 aaPredicted RBP11.45□□□□□ -0.58
CLK3-226ENST00000569406 SIGIRRQ6IA17 410 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 DTX3Q8N9I9 347 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 TNIP2Q8NFZ5 429 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 NEDD1Q8NHV4 660 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 CYTH2Q99418 400 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 RSPH9Q9H1X1 276 aaPredicted RBP11.45□□□□□ -0.58
CLK3-226ENST00000569406 SIAEQ9HAT2 523 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 C12orf4Q9NQ89 552 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 PRKAG3Q9UGI9 489 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 PCDHGA8Q9Y5G5 932 aa11.45□□□□□ -0.58
CLK3-226ENST00000569406 HEMK1Q9Y5R4 338 aaPredicted RBP11.45□□□□□ -0.58
CLK3-226ENST00000569406 TTC26A0AVF1 554 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 WDR91A4D1P6 747 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 ZSCAN5BA6NJL1 495 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 CDK2AP1O14519 115 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 CNOT3O75175 753 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 HAUS5O94927 633 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 BAG2O95816 211 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 ACADVLP49748 655 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 ATP1A4Q13733 1029 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 CLUL1Q15846 466 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 ZNF423Q2M1K9 1284 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 SLC27A3Q5K4L6 730 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 USP17L2Q6R6M4 530 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 CLVS1Q8IUQ0 354 aaPredicted RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 UTP11Q9Y3A2 253 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 DAGLAQ9Y4D2 1042 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 CCDC162PA2VCL2 907 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 GOLGA8CPA6NN73 597 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 RGS16O15492 202 aaPredicted RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 MARK3P27448 753 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 MTIF2P46199 727 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 HSD17B4P51659 736 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 BASP1P80723 227 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 SPIDRQ14159 915 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 TMEM266Q2M3C6 531 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 KRT26Q7Z3Y9 468 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 MXD3Q9BW11 206 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 KIAA1683Q9H0B3 1180 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 LRMDAQ9H2I8 198 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 THAP9Q9H5L6 903 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 XAB2Q9HCS7 855 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 DDX56Q9NY93 547 aaKnown RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 CEP72Q9P209 647 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 GDAQ9Y2T3 454 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 GPSM3Q9Y4H4 160 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 GUCY1B2O75343 617 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 BMP15O95972 392 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 SNHG28P0DPA3 235 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 PCSK6P29122 969 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 SLCO1A2P46721 670 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 GSSP48637 474 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 BCAP31P51572 246 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 ITGA9Q13797 1035 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 SF3B4Q15427 424 aaKnown RBP eCLIP11.44□□□□□ -0.582e-6■■■■□ 19.4
CLK3-226ENST00000569406 DSTYKQ6XUX3 929 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 CLEC10AQ8IUN9 316 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 REM2Q8IYK8 340 aaPredicted RBP11.44□□□□□ -0.58
CLK3-226ENST00000569406 NATD1Q8N6N6 113 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 ANKRD42Q8N9B4 389 aa11.44□□□□□ -0.58
CLK3-226ENST00000569406 OR7G1Q8NGA0 311 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms