RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 CHAMP1Q96JM3 812 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 ACCSQ96QU6 501 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 SMOC2Q9H3U7 446 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 PIDD1Q9HB75 910 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 RCOR1Q9UKL0 485 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 CLUHO75153 1309 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 TMEM221A6NGB7 291 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 M0R296 226 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 PPEF2O14830 753 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 POLR2DO15514 142 aaKnown RBP19.97■□□□□ 0.79
CLN3-221ENST00000566057 C8AP07357 584 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 SPATA1Q5VX52 437 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 SLC8B1Q6J4K2 584 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 CD302Q8IX05 232 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 IQUBQ8NA54 791 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 GLIS3Q8NEA6 775 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 POMGNT1Q8WZA1 660 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 ACSF2Q96CM8 615 aaPredicted RBP19.97■□□□□ 0.79
CLN3-221ENST00000566057 TRIM9Q9C026 710 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 CFAP45Q9UL16 551 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 PCDHB13Q9Y5F0 798 aa19.97■□□□□ 0.79
CLN3-221ENST00000566057 PRPF6O94906 941 aaKnown RBP19.96■□□□□ 0.79
CLN3-221ENST00000566057 NFICP08651 508 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 ROR1Q01973 937 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 SIGLEC14Q08ET2 396 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 PPM1LQ5SGD2 360 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 LIN9Q5TKA1 542 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 RESP18Q5W5W9 173 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 CCDC65Q8IXS2 484 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 SLC7A14Q8TBB6 771 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 MYADMQ96S97 322 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 TSPAN18Q96SJ8 248 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 CUEDC2Q9H467 287 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 PCDHB8Q9UN66 801 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 EXOC7Q9UPT5 735 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 SORCS3Q9UPU3 1222 aa19.96■□□□□ 0.79
CLN3-221ENST00000566057 WDR27A2RRH5 827 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 M0QZQ0 153 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 CCL16O15467 120 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 ABLIM3O94929 683 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 HNRNPA1P09651 372 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-221ENST00000566057 AARSP49588 968 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-221ENST00000566057 ARPP19P56211 112 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 POSTNQ15063 836 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 GRASPQ7Z6J2 395 aaPredicted RBP19.95■□□□□ 0.78
CLN3-221ENST00000566057 ZNF461Q8TAF7 563 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 ASIC4Q96FT7 647 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 LRRC27Q9C0I9 530 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 FBXL5Q9UKA1 691 aa19.95■□□□□ 0.78
CLN3-221ENST00000566057 TIMM13Q9Y5L4 95 aaPredicted RBP19.95■□□□□ 0.78
CLN3-221ENST00000566057 H7C4K7 107 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 XPOTO43592 962 aaKnown RBP19.94■□□□□ 0.78
CLN3-221ENST00000566057 CASP1P29466 404 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 HOXA9P31269 272 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 GBP2P32456 591 aaPredicted RBP19.94■□□□□ 0.78
CLN3-221ENST00000566057 WNT7BP56706 349 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 NTHL1P78549 312 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 AMPD3Q01432 767 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 ALCAMQ13740 583 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 TMEM132DQ14C87 1099 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 UVSSAQ2YD98 709 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 CTXN3Q4LDR2 81 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 C9orf57Q5W0N0 161 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 CNNM4Q6P4Q7 775 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 BMP8AQ7Z5Y6 402 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 SYCP3Q8IZU3 236 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 APPL2Q8NEU8 664 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 BEST2Q8NFU1 509 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 C7orf25Q9BPX7 421 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 FAM213AQ9BRX8 229 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 ASB7Q9H672 318 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 DERAQ9Y315 318 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.94■□□□□ 0.78
CLN3-221ENST00000566057 TSC2P49815 1807 aa19.94■□□□□ 0.78
CLN3-221ENST00000566057 PIRO00625 290 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 SPTLC1O15269 473 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 HOXD13P35453 343 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 LILRA4P59901 499 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 ASIC1P78348 528 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 MTMR3Q13615 1198 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 EFCAB13Q8IY85 973 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 PBXIP1Q96AQ6 731 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 SAAL1Q96ER3 474 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 CBWD1Q9BRT8 395 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 BLZF1Q9H2G9 400 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 KCNK12Q9HB15 430 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 HCFC1R1Q9NWW0 138 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 FAM13BQ9NYF5 915 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 POLIQ9UNA4 740 aa19.93■□□□□ 0.78
CLN3-221ENST00000566057 KMT2EQ8IZD2 1858 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 ANO9A1A5B4 782 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 GOLGA8IPA6NC78 632 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 GOLGA8JA6NMD2 632 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 OAZ2O95190 189 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 SEC24AO95486 1093 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 GARTP22102 1010 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 POU5F1Q01860 360 aaKnown RBP19.92■□□□□ 0.78
CLN3-221ENST00000566057 DSTYKQ6XUX3 929 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 GET4Q7L5D6 327 aaPredicted RBP19.92■□□□□ 0.78
CLN3-221ENST00000566057 UBALD2Q8IYN6 164 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms