RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KANSL1LA0AUZ9 987 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 PRRG1O14668 218 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 CXCL8P10145 99 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 LRPAP1P30533 357 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 MCM4P33991 863 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 MCM2P49736 904 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 ZNF131P52739 623 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 CACNB1Q02641 598 aaPredicted RBP18.67■□□□□ 0.58
CLN3-216ENST00000565316 MLF2Q15773 248 aaPredicted RBP18.67■□□□□ 0.58
CLN3-216ENST00000565316 CTXN3Q4LDR2 81 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 SPECC1Q5M775 1068 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 ZNF280DQ6N043 979 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 HAUS6Q7Z4H7 955 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 C1orf210Q8IVY1 113 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 DDX12PQ92771 950 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 MCRS1Q96EZ8 462 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 OSBPL6Q9BZF3 934 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 CYP4F11Q9HBI6 524 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 AFF4Q9UHB7 1163 aaKnown RBP18.67■□□□□ 0.58
CLN3-216ENST00000565316 INSL5Q9Y5Q6 135 aa18.67■□□□□ 0.58
CLN3-216ENST00000565316 M0QZQ0 153 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 FAM189A1O60320 539 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 OAZ2O95190 189 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 PIGRP01833 764 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 ADRB2P07550 413 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 CEBPBP17676 345 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 CYP3A5P20815 502 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 AARSP49588 968 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLN3-216ENST00000565316 ARPP19P56211 112 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 KYAT1Q16773 422 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 ADSSL1Q8N142 457 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 REEP2Q9BRK0 252 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 TBX20Q9UMR3 447 aa18.66■□□□□ 0.58
CLN3-216ENST00000565316 LRRN2O75325 713 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 SP9P0CG40 484 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 TANGO2Q6ICL3 276 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 GPBP1Q86WP2 473 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 BEST2Q8NFU1 509 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 ELSPBP1Q96BH3 223 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 TCEAL4Q96EI5 215 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 TSPAN18Q96SJ8 248 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 CORO1BQ9BR76 489 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 OXCT2Q9BYC2 517 aaPredicted RBP18.65■□□□□ 0.58
CLN3-216ENST00000565316 PLA2G2FQ9BZM2 168 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 BLOC1S4Q9NUP1 217 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 SMC3Q9UQE7 1217 aa18.65■□□□□ 0.58
CLN3-216ENST00000565316 PDCD11Q14690 1871 aaKnown RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 LACTBL1A8MY62 500 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 ZNF197O14709 1029 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 BMP15O95972 392 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 FCARP24071 287 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 MARCKSP29966 332 aaPredicted RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 UBA7P41226 1012 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 TNFSF9P41273 254 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 CCR2P41597 374 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 EPHA5P54756 1037 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 ADCY1Q08828 1119 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 ENOX2Q16206 610 aaKnown RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 LARP1BQ659C4 914 aaKnown RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 MAML2Q8IZL2 1156 aaPredicted RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 TMEM130Q8N3G9 435 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 KIF12Q96FN5 646 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 BICD1Q96G01 975 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 CALML4Q96GE6 196 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 UBQLN1Q9UMX0 589 aaKnown RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 MTF2Q9Y483 593 aaPredicted RBP18.64■□□□□ 0.57
CLN3-216ENST00000565316 CACNA1IQ9P0X4 2223 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 MYH11P35749 1972 aa18.64■□□□□ 0.57
CLN3-216ENST00000565316 A0A0B4J269 797 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 NRG2O14511 850 aaPredicted RBP18.63■□□□□ 0.57
CLN3-216ENST00000565316 OGTO15294 1046 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 CENPBP07199 599 aaPredicted RBP18.63■□□□□ 0.57
CLN3-216ENST00000565316 LONP1P36776 959 aaKnown RBP18.63■□□□□ 0.57
CLN3-216ENST00000565316 MATR3P43243 847 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLN3-216ENST00000565316 LIG4P49917 911 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 PPP2R3AQ06190 1150 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 SPAG1Q07617 926 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 FAM78AQ5JUQ0 283 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 ZBTB41Q5SVQ8 909 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 RNF19BQ6ZMZ0 732 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 BRAPQ7Z569 592 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 MYCT1Q8N699 235 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 RAD54LQ92698 747 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 FIZ1Q96SL8 496 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 BCO2Q9BYV7 579 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 PARVGQ9HBI0 331 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 LTB4R2Q9NPC1 389 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 CEP72Q9P209 647 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.63■□□□□ 0.57
CLN3-216ENST00000565316 R4GN57 208 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 COL4A3Q01955 1670 aa18.63■□□□□ 0.57
CLN3-216ENST00000565316 OTOGLQ3ZCN5 2332 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 SHISA7A6NL88 538 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 FAM170BA6NMN3 283 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 HNRNPDLO14979 420 aaKnown RBP18.62■□□□□ 0.57
CLN3-216ENST00000565316 MOSPD3O75425 235 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 FAM13AO94988 1023 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 VNN2O95498 520 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 LMNAP02545 664 aaKnown RBP18.62■□□□□ 0.57
CLN3-216ENST00000565316 PLCG1P19174 1290 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms