RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 APPL1Q9UKG1 709 aa6.57□□□□□ -1.36
CLK3-212ENST00000563418 A0A1W2PRG6 482 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 H7C1W4 665 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 GAP43P17677 238 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ITGAXP20702 1163 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SLC1A1P43005 524 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 KRT17Q04695 432 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 POLA2Q14181 598 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ARMC4Q5T2S8 1044 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CCSAPQ6IQ19 270 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 SHC4Q6S5L8 630 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 GLMNQ92990 594 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 MS4A14Q96JA4 679 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CHP1Q99653 195 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 UBE2OQ9C0C9 1292 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 SUN2Q9UH99 717 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 PHGDHO43175 533 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 PRPF3O43395 683 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 LDHCP07864 332 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 HOXD12P35452 270 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CD97P48960 835 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ERVK-24P63145 666 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SLFN12Q8IYM2 578 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 IRGQQ8WZA9 623 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 EHD1Q9H4M9 534 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CYLDQ9NQC7 956 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 DBR1Q9UK59 544 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 SMCO2A6NFE2 343 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SLC26A4O43511 780 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 GLI1P08151 1106 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 GPC5P78333 572 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 OTUD4Q01804 1114 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 CENPCQ03188 943 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 PPARAQ07869 468 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 PARP10Q53GL7 1025 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 LVRNQ6Q4G3 990 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 RBM15Q96T37 977 aaKnown RBP eCLIP6.56□□□□□ -1.363e-6■■■■□ 24.3
CLK3-212ENST00000563418 GPCPD1Q9NPB8 672 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 GPR108Q9NPR9 543 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 PCDHGA4Q9Y5G9 962 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ABCA8O94911 1581 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 DNM1LO00429 736 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 RTN2O75298 545 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 PSMC2P35998 433 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 NT5DC1Q5TFE4 455 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 IKBIPQ70UQ0 350 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 OTULINQ96BN8 352 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 NUDT16Q96DE0 195 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 OXNAD1Q96HP4 312 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 NSMCE3Q96MG7 304 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SH3GLB2Q9NR46 395 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SLC24A2Q9UI40 661 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 USTQ9Y2C2 406 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 HTR3EA5X5Y0 456 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 TEX28O15482 410 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SERPINB9P50453 376 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 OXCT1P55809 520 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 NEK5Q6P3R8 708 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SYCE2Q6PIF2 218 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 PCYOX1LQ8NBM8 494 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 DEPTORQ8TB45 409 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CKAP2Q8WWK9 683 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SCYL1Q96KG9 808 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 EHD4Q9H223 541 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CLK4Q9HAZ1 481 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 SNRKQ9NRH2 765 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 TUBGCP4Q9UGJ1 667 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 INO80Q9ULG1 1556 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 KDM6BO15054 1643 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 OVOS2A0A0G2JMS6 1433 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 MAGEB6P1A0A0J9YX57 407 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 MAP3K13O43283 966 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 FMR1Q06787 632 aaKnown RBP eCLIP6.56□□□□□ -1.36
CLK3-212ENST00000563418 DPYDQ12882 1025 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 BNC2Q6ZN30 1099 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 HEATR4Q86WZ0 1026 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 CREG2Q8IUH2 290 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SYTL5Q8TDW5 730 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 KIAA1683Q9H0B3 1180 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 GEMIN4P57678 1058 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 PABPC4Q13310 644 aaKnown RBP eCLIP6.56□□□□□ -1.36
CLK3-212ENST00000563418 LRRC8EQ6NSJ5 796 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 NOP9Q86U38 636 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 ZBED8Q8IZ13 594 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 STK33Q9BYT3 514 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 STN1Q9H668 368 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 KCNK4Q9NYG8 393 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 A0A0A6YYK5 440 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 LRRIQ4A6NIV6 560 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ATP9BO43861 1147 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 SEC24DO94855 1032 aaPredicted RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 THRAP10827 490 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 MAPK6Q16659 721 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ZFP69Q49AA0 526 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ARHGEF19Q8IW93 802 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 DCUN1D5Q9BTE7 237 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 ACAT2Q9BWD1 397 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 UNKQ9C0B0 810 aaKnown RBP6.56□□□□□ -1.36
CLK3-212ENST00000563418 KLHL31Q9H511 634 aa6.56□□□□□ -1.36
CLK3-212ENST00000563418 C12orf4Q9NQ89 552 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms