RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MCRS1Q96EZ8 462 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 UROC1Q96N76 676 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 ACAP3Q96P50 834 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 REEP2Q9BRK0 252 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 HAPLN2Q9GZV7 340 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 NCDNQ9UBB6 729 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 MRPS23Q9Y3D9 190 aaKnown RBP20.75■□□□□ 0.91
VPS35-202ENST00000561713 RBM19Q9Y4C8 960 aaKnown RBP20.75■□□□□ 0.91
VPS35-202ENST00000561713 PCDHGA2Q9Y5H1 932 aa20.75■□□□□ 0.91
VPS35-202ENST00000561713 TCHHQ07283 1943 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 VPS37CA5D8V6 355 aaPredicted RBP20.74■□□□□ 0.91
VPS35-202ENST00000561713 CXCL8P10145 99 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 TARSP26639 723 aaKnown RBP20.74■□□□□ 0.91
VPS35-202ENST00000561713 MATR3P43243 847 aaKnown RBP eCLIP20.74■□□□□ 0.91
VPS35-202ENST00000561713 ARSHQ5FYA8 562 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 TSSK4Q6SA08 328 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 SPIRE2Q8WWL2 714 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 CLDN23Q96B33 292 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 BICD1Q96G01 975 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 TIPINQ9BVW5 301 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 C17orf75Q9HAS0 396 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 CNTN3Q9P232 1028 aa20.74■□□□□ 0.91
VPS35-202ENST00000561713 ECI2O75521 394 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 RHOP08100 348 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 PLCG1P19174 1290 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 MAGEA9P43362 315 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 ROR1Q01973 937 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 KARSQ15046 597 aaKnown RBP20.73■□□□□ 0.91
VPS35-202ENST00000561713 ARL6IP4Q66PJ3 421 aaKnown RBP20.73■□□□□ 0.91
VPS35-202ENST00000561713 ZBTB44Q8NCP5 570 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 BORCS6Q96GS4 357 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 HEBP1Q9NRV9 189 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 SLC38A7Q9NVC3 462 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 ZSCAN32Q9NX65 697 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 BACE2Q9Y5Z0 518 aa20.73■□□□□ 0.91
VPS35-202ENST00000561713 SHISA7A6NL88 538 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 K7ENM7 598 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 TOM1L1O75674 476 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 KCNE1P15382 129 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 CEBPBP17676 345 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 TNFSF9P41273 254 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 MCM2P49736 904 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 GUCY2FP51841 1108 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 ARPP19P56211 112 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 FZD5Q13467 585 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 MCM6Q14566 821 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 SLC10A6Q3KNW5 377 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 TANGO2Q6ICL3 276 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 RTL10Q7L3V2 364 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 RASSF8Q8NHQ8 419 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 NELL1Q92832 810 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 BLOC1S4Q9NUP1 217 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 GDE1Q9NZC3 331 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.72■□□□□ 0.91
VPS35-202ENST00000561713 NUB1Q9Y5A7 615 aa20.72■□□□□ 0.91
VPS35-202ENST00000561713 SCN1AP35498 2009 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 WDR27A2RRH5 827 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 MCM4P33991 863 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 SMTNP53814 917 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 NCKAP1LP55160 1127 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 ZNF852Q6ZMS4 543 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 ANKS3Q6ZW76 656 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 NELL2Q99435 816 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 EPC1Q9H2F5 836 aa20.71■□□□□ 0.91
VPS35-202ENST00000561713 SMG5Q9UPR3 1016 aaKnown RBP20.71■□□□□ 0.91
VPS35-202ENST00000561713 TRAPPC3O43617 180 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 LILRB5O75023 590 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 FAM13AO94988 1023 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 UBA7P41226 1012 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 RPS9P46781 194 aaKnown RBP20.7■□□□□ 0.9
VPS35-202ENST00000561713 MCL1Q07820 350 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 MTAPQ13126 283 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 SF3A1Q15459 793 aaKnown RBP20.7■□□□□ 0.9
VPS35-202ENST00000561713 ZPBP2Q6X784 338 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 HAUS6Q7Z4H7 955 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 CALML4Q96GE6 196 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 NTPCRQ9BSD7 190 aaKnown RBP20.7■□□□□ 0.9
VPS35-202ENST00000561713 ZHX3Q9H4I2 956 aa20.7■□□□□ 0.9
VPS35-202ENST00000561713 AVENQ9NQS1 362 aaPredicted RBP20.7■□□□□ 0.9
VPS35-202ENST00000561713 ARHGEF37A1IGU5 675 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 NRG2O14511 850 aaPredicted RBP20.69■□□□□ 0.9
VPS35-202ENST00000561713 HNRNPDLO14979 420 aaKnown RBP20.69■□□□□ 0.9
VPS35-202ENST00000561713 NCAM2O15394 837 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 CLDN3O15551 220 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 KRT18P05783 430 aaKnown RBP20.69■□□□□ 0.9
VPS35-202ENST00000561713 PTPN2P17706 415 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 FCARP24071 287 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 LIG4P49917 911 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 ADCY1Q08828 1119 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 GRM2Q14416 872 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 SLC8B1Q6J4K2 584 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 BRAPQ7Z569 592 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 ZNF461Q8TAF7 563 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 ELSPBP1Q96BH3 223 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 TCEAL4Q96EI5 215 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 AK8Q96MA6 479 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 CORO1BQ9BR76 489 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 PRMT8Q9NR22 394 aaPredicted RBP20.69■□□□□ 0.9
VPS35-202ENST00000561713 KCND2Q9NZV8 630 aa20.69■□□□□ 0.9
VPS35-202ENST00000561713 LARSQ9P2J5 1176 aaKnown RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms