RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 DDX12PQ92771 950 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 NXPE3Q969Y0 559 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 MSTO1Q9BUK6 570 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 PANK2Q9BZ23 570 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 MFSD1Q9H3U5 465 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 ST6GALNAC4Q9H4F1 302 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 RPF1Q9H9Y2 349 aaKnown RBP11.2□□□□□ -0.62
CLK3-205ENST00000561673 HCFC1R1Q9NWW0 138 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 DNMT3BQ9UBC3 853 aaKnown RBP11.2□□□□□ -0.62
CLK3-205ENST00000561673 STK17AQ9UEE5 414 aa11.2□□□□□ -0.62
CLK3-205ENST00000561673 MORC2Q9Y6X9 1032 aaPredicted RBP11.2□□□□□ -0.62
CLK3-205ENST00000561673 VWA8A3KMH1 1905 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 A0A087X0B3 334 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 TISP43B9A030 160 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 ATF2P15336 505 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 NPR3P17342 541 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 CYP3A5P20815 502 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 LRPAP1P30533 357 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 ABCD1P33897 745 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 TXLNAP40222 546 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 NASPP49321 788 aaPredicted RBP11.19□□□□□ -0.62
CLK3-205ENST00000561673 GUCY2FP51841 1108 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 PTPN5P54829 565 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 HTR4Q13639 388 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 CTXN3Q4LDR2 81 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 SV2BQ7L1I2 683 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 SFR1Q86XK3 245 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 SIX5Q8N196 739 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 TMEM105Q8N8V8 129 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 APPL2Q8NEU8 664 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 FGF13Q92913 245 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 SNX21Q969T3 373 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 DNAJC19Q96DA6 116 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 PHOX2BQ99453 314 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 RPP25Q9BUL9 199 aaKnown RBP11.19□□□□□ -0.62
CLK3-205ENST00000561673 STRA6Q9BX79 667 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 IKZF4Q9H2S9 585 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 FBXL5Q9UKA1 691 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 CPSF3Q9UKF6 684 aaKnown RBP11.19□□□□□ -0.62
CLK3-205ENST00000561673 FBXL21Q9UKT6 434 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 CDH7Q9ULB5 785 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 UBQLN1Q9UMX0 589 aaKnown RBP11.19□□□□□ -0.62
CLK3-205ENST00000561673 PCDHB8Q9UN66 801 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 ZFP37Q9Y6Q3 630 aaPredicted RBP11.19□□□□□ -0.62
CLK3-205ENST00000561673 ZDBF2Q9HCK1 2354 aa11.19□□□□□ -0.62
CLK3-205ENST00000561673 MTCL1Q9Y4B5 1905 aaKnown RBP11.19□□□□□ -0.62
CLK3-205ENST00000561673 TRIP11Q15643 1979 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 ARHGEF37A1IGU5 675 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 M0QZQ0 153 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 PRRG1O14668 218 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 PI15O43692 258 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 SEC24AO95486 1093 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 CFHP08603 1231 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 ADSSP30520 456 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 ELF1P32519 619 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 AARSP49588 968 aaKnown RBP eCLIP11.18□□□□□ -0.62
CLK3-205ENST00000561673 ACOT2P49753 483 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 MRE11P49959 708 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 CLCN5P51795 746 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 PABPC1LQ4VXU2 614 aaKnown RBP11.18□□□□□ -0.62
CLK3-205ENST00000561673 SPATA1Q5VX52 437 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 ADALQ6DHV7 355 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 JADE1Q6IE81 842 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 PARM1Q6UWI2 310 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 CCDC73Q6ZRK6 1079 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 TCEAL8Q8IYN2 117 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 LINC00301Q8NCQ3 95 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 FLCNQ8NFG4 579 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 FGF14Q92915 247 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 TSPAN18Q96SJ8 248 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 MRPL44Q9H9J2 332 aaKnown RBP11.18□□□□□ -0.62
CLK3-205ENST00000561673 CYP4F11Q9HBI6 524 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 TBC1D7Q9P0N9 293 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 TFIP11Q9UBB9 837 aaKnown RBP11.18□□□□□ -0.62
CLK3-205ENST00000561673 WNT16Q9UBV4 365 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 TIMM13Q9Y5L4 95 aaPredicted RBP11.18□□□□□ -0.62
CLK3-205ENST00000561673 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.18□□□□□ -0.62
CLK3-205ENST00000561673 STYXL1Q9Y6J8 313 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 NUMBLQ9Y6R0 609 aa11.18□□□□□ -0.62
CLK3-205ENST00000561673 KRBA1A5PL33 1030 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 PPEF2O14830 753 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 XPOTO43592 962 aaKnown RBP11.17□□□□□ -0.62
CLK3-205ENST00000561673 GALR2O43603 387 aaPredicted RBP11.17□□□□□ -0.62
CLK3-205ENST00000561673 PPP1R37O75864 691 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 OAZ2O95190 189 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 RHOP08100 348 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 NFICP08651 508 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 SRFP11831 508 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 STAT6P42226 847 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 LILRA4P59901 499 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 YWHAHQ04917 246 aaPredicted RBP11.17□□□□□ -0.62
CLK3-205ENST00000561673 ADCY1Q08828 1119 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 KCNA1Q09470 495 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 STK38Q15208 465 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 SLC5A9Q2M3M2 681 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 TPGS2Q68CL5 300 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 CWF19L1Q69YN2 538 aaKnown RBP11.17□□□□□ -0.62
CLK3-205ENST00000561673 SLFN12LQ6IEE8 588 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 ZNF280DQ6N043 979 aa11.17□□□□□ -0.62
CLK3-205ENST00000561673 CRELD2Q6UXH1 353 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms