RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	HTATSF1	O43719	755 aa	Known RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	OFD1	O75665	1012 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	MATN4	O95460	622 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	CBSL	P0DN79	551 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	DDX6	P26196	483 aa	Known RBP eCLIP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	MCM5	P33992	734 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	CBS	P35520	551 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	MPL	P40238	635 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	SUMO1	P63165	101 aa	Known RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	GABRE	P78334	506 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	PKP1	Q13835	747 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	DCTN1	Q14203	1278 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	DDR2	Q16832	855 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	KRT24	Q2M2I5	525 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	FAM214A	Q32MH5	1076 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	PIK3R6	Q5UE93	754 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	SLFN12L	Q6IEE8	588 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	SULT6B1	Q6IMI4	303 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	CAVIN1	Q6NZI2	390 aa	Known RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	RTN4RL1	Q86UN2	441 aa	Predicted RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	ZGPAT	Q8N5A5	531 aa	Known RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	CISD2	Q8N5K1	135 aa	Known RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	OR5M3	Q8NGP4	307 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	GPT2	Q8TD30	523 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	MAML3	Q96JK9	1138 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	ZNF778	Q96MU6	729 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	UIMC1	Q96RL1	719 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	HAPLN2	Q9GZV7	340 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	SEMA4G	Q9NTN9	838 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	BABAM1	Q9NWV8	329 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	DKK2	Q9UBU2	259 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	DNAI1	Q9UI46	699 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	NOL7	Q9UMY1	257 aa	Known RBP	2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	ZKSCAN5	Q9Y2L8	839 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	PLEKHG2	Q9H7P9	1386 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	JCAD	Q9P266	1359 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	PXDN	Q92626	1479 aa		2.94	□□□□□ -1.94
SPG11-223	ENST00000560858	MAST3	O60307	1309 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	MST1R	Q04912	1400 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ABCA3	Q99758	1704 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	SHANK3	Q9BYB0	1731 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	CHD4	Q14839	1912 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ANKRD36C	Q5JPF3	1778 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	TRBV23-1	A0A0A0MS06	115 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	UNC119B	A6NIH7	251 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	PRR5-ARHGAP8	B1AHC4	643 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ELL2	O00472	640 aa	Predicted RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	PROP1	O75360	226 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	FSBP	O95073	299 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	RASGRP1	O95267	797 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	CRTAM	O95727	393 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	PRL	P01236	227 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	GNAI2	P04899	355 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	GNAI3	P08754	354 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	HOXB7	P09629	217 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	SPATA31D3	P0C874	917 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	EGR2	P11161	476 aa	Predicted RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	HSP90B1	P14625	803 aa	Known RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	HNRNPL	P14866	589 aa	Known RBP eCLIP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	MX1	P20591	662 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	MCC	P23508	829 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	CHML	P26374	656 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	PTTG1IP	P53801	180 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	BCAR1	P56945	870 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	KIAA1614	Q5VZ46	1190 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ZNF425	Q6IV72	752 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ARMC6	Q6NXE6	501 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	CC2D1A	Q6P1N0	951 aa	Predicted RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	SPATA31D4	Q6ZUB0	917 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	MCM10	Q7L590	875 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	G2E3	Q7L622	706 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	C16orf71	Q8IYS4	520 aa	Predicted RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	SSH3	Q8TE77	659 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	WASF1	Q92558	559 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ANP32B	Q92688	251 aa	Known RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	RPGR	Q92834	1020 aa	Known RBP	2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	TMX3	Q96JJ7	454 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	TTC14	Q96N46	770 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	LRRCC1	Q9C099	1032 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	C4A	P0C0L4	1744 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	C4B	P0C0L5	1744 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ARAP2	Q8WZ64	1704 aa		2.93	□□□□□ -1.94
SPG11-223	ENST00000560858	ADCY9	O60503	1353 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	MYH3	P11055	1940 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	RFX7	Q2KHR2	1363 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	HEG1	Q9ULI3	1381 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	PNMA6E	A0A0J9YXQ4	647 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	KCNAB3	O43448	404 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	RAB11FIP3	O75154	756 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	MSN	P26038	577 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	HSPA4	P34932	840 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	FNTB	P49356	437 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	RARRES1	P49788	294 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	CACNA2D1	P54289	1103 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	WNT3A	P56704	352 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	RNASE9	P60153	205 aa	Known RBP	2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	ATP8B2	P98198	1209 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	IRF9	Q00978	393 aa		2.92	□□□□□ -1.94
SPG11-223	ENST00000560858	MTX1	Q13505	466 aa		2.92	□□□□□ -1.94

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms