RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 RAPGEF1Q13905 1077 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 DSC3Q14574 896 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 PTPN21Q16825 1174 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 HABP4Q5JVS0 413 aaKnown RBP6.92□□□□□ -1.3
SPG11-221ENST00000560299 TMEM240Q5SV17 173 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 UBXN11Q5T124 520 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TDRD10Q5VZ19 366 aaKnown RBP6.92□□□□□ -1.3
SPG11-221ENST00000560299 LMBRD2Q68DH5 695 aaPredicted RBP6.92□□□□□ -1.3
SPG11-221ENST00000560299 JADE1Q6IE81 842 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 PDXDC1Q6P996 788 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 C15orf39Q6ZRI6 1047 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 SLC24A5Q71RS6 500 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TRAPPC11Q7Z392 1133 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 MRPL10Q7Z7H8 261 aaKnown RBP6.92□□□□□ -1.3
SPG11-221ENST00000560299 VPS36Q86VN1 386 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TMEM192Q8IY95 271 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 PPM1KQ8N3J5 372 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TC2NQ8N9U0 490 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TAS1R2Q8TE23 839 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 ZNF516Q92618 1163 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 JAKMIP2Q96AA8 810 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 SNX27Q96L92 541 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 SLC9A7Q96T83 725 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 DNAJC7Q99615 494 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TTYH3Q9C0H2 523 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 MTMR12Q9C0I1 747 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 DNAI2Q9GZS0 605 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 GANQ9H2C0 597 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 NXF3Q9H4D5 531 aaKnown RBP6.92□□□□□ -1.3
SPG11-221ENST00000560299 DEF6Q9H4E7 631 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 UBE2TQ9NPD8 197 aaPredicted RBP6.92□□□□□ -1.3
SPG11-221ENST00000560299 NLRC4Q9NPP4 1024 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 RGS18Q9NS28 235 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 DPP3Q9NY33 737 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 CNTN3Q9P232 1028 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 DNAJC12Q9UKB3 198 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 PLAGL2Q9UPG8 496 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 TRANK1O15050 2925 aa6.92□□□□□ -1.3
SPG11-221ENST00000560299 CHD9Q3L8U1 2897 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 SMIM28A0A1B0GU29 152 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 HOXA2O43364 376 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 NOL4O94818 638 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ASS1P00966 412 aaKnown RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 SERPING1P05155 500 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 THP07101 528 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 NFICP08651 508 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 KCNE1P15382 129 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 CSF2RAP15509 400 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 FERP16591 822 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 CYP3A5P20815 502 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 PAX3P23760 479 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 HNRNPH3P31942 346 aaKnown RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 CYP2C18P33260 490 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 CYLC1P35663 651 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 PNPLA4P41247 253 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 BPIFB4P59827 614 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 NOP14P78316 857 aaKnown RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 CDK17Q00537 523 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 LRMPQ12912 555 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 IKBKEQ14164 716 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ARID5BQ14865 1188 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 DRAP1Q14919 205 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 ASIC2Q16515 512 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ZNF699Q32M78 642 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 XKR4Q5GH76 650 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ZNF667Q5HYK9 610 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 GLB1LQ6UWU2 654 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ALKAL1Q6UXT8 129 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ECHDC2Q86YB7 292 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 EFCAB13Q8IY85 973 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 CCDC170Q8IYT3 715 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ABI1Q8IZP0 508 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 CRIPAKQ8N1N5 446 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 TXLNBQ8N3L3 684 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 TTC39CQ8N584 583 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 RNF169Q8NCN4 708 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 SMG8Q8ND04 991 aaKnown RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 OR5B17Q8NGF7 314 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 LMO3Q8TAP4 145 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 SEMA4DQ92854 862 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 CCDC42Q96M95 316 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ZNF560Q96MR9 790 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 PPP1R12CQ9BZL4 782 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 FAM124BQ9H5Z6 455 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 ELAC1Q9H777 363 aaKnown RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 RSAD1Q9HA92 442 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 SIX2Q9NPC8 291 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 LUC7LQ9NQ29 371 aaKnown RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 PRDM5Q9NQX1 630 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 AIPL1Q9NZN9 384 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 KANSL3Q9P2N6 904 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 LRFN2Q9ULH4 789 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ZMYND8Q9ULU4 1186 aaPredicted RBP6.91□□□□□ -1.3
SPG11-221ENST00000560299 AGAP1Q9UPQ3 857 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ZKSCAN5Q9Y2L8 839 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 HES2Q9Y543 173 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 PCDHB7Q9Y5E2 793 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 FHOD1Q9Y613 1164 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms