RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 TOM1L1O75674 476 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 ABLIM3O94929 683 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 PLA2G4BP0C869 781 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 CXCL8P10145 99 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 CEBPBP17676 345 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 MCM4P33991 863 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 STARD6P59095 220 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 STRN3Q13033 797 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 MRPL58Q14197 206 aaKnown RBP12.71□□□□□ -0.37
USP3-214ENST00000559718 TMEM119Q4V9L6 283 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 ARSHQ5FYA8 562 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 ADSSL1Q8N142 457 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 PJA1Q8NG27 643 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 TIPINQ9BVW5 301 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 PLA2G2FQ9BZM2 168 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 DAXXQ9UER7 740 aaPredicted RBP12.71□□□□□ -0.37
USP3-214ENST00000559718 MRPS23Q9Y3D9 190 aaKnown RBP12.71□□□□□ -0.37
USP3-214ENST00000559718 MTF2Q9Y483 593 aaPredicted RBP12.71□□□□□ -0.37
USP3-214ENST00000559718 NUB1Q9Y5A7 615 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 R4GN57 208 aa12.71□□□□□ -0.37
USP3-214ENST00000559718 PDCD11Q14690 1871 aaKnown RBP12.7□□□□□ -0.38
USP3-214ENST00000559718 H3BQV1 296 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 SYN3O14994 580 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 ATF2P15336 505 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 ELF1P32519 619 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 RPL9P32969 192 aaKnown RBP12.7□□□□□ -0.38
USP3-214ENST00000559718 SMTNP53814 917 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 MCL1Q07820 350 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 MLF2Q15773 248 aaPredicted RBP12.7□□□□□ -0.38
USP3-214ENST00000559718 CTXN3Q4LDR2 81 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 SLC44A4Q53GD3 710 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 ZBTB41Q5SVQ8 909 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 RTL10Q7L3V2 364 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 DDX12PQ92771 950 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 TCEAL4Q96EI5 215 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 CDK5RAP3Q96JB5 506 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 SUSD3Q96L08 255 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 TBC1D32Q96NH3 1257 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 CORO1BQ9BR76 489 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 CYP4F11Q9HBI6 524 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 KIF3AQ9Y496 699 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 DMDP11532 3685 aa12.7□□□□□ -0.38
USP3-214ENST00000559718 KANSL1LA0AUZ9 987 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 H7C4K7 107 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 CLDN3O15551 220 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 LRG1P02750 347 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 PTPN2P17706 415 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 CD72P21854 359 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 TNFSF9P41273 254 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 CCR2P41597 374 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 MATR3P43243 847 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP3-214ENST00000559718 GUCY2FP51841 1108 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 NCKAP1LP55160 1127 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 GRIN1Q05586 938 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 ADCY1Q08828 1119 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 PRSS36Q5K4E3 855 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 ARL6IP4Q66PJ3 421 aaKnown RBP12.69□□□□□ -0.38
USP3-214ENST00000559718 TANGO2Q6ICL3 276 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 ZPBP2Q6X784 338 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 SPNS2Q8IVW8 549 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 C1orf210Q8IVY1 113 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 HS6ST3Q8IZP7 471 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 REEP2Q9BRK0 252 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 DDX23Q9BUQ8 820 aaKnown RBP12.69□□□□□ -0.38
USP3-214ENST00000559718 TIMM13Q9Y5L4 95 aaPredicted RBP12.69□□□□□ -0.38
USP3-214ENST00000559718 INSL5Q9Y5Q6 135 aa12.69□□□□□ -0.38
USP3-214ENST00000559718 TTC26A0AVF1 554 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 SP9P0CG40 484 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 DHX8Q14562 1220 aaKnown RBP12.68□□□□□ -0.38
USP3-214ENST00000559718 UBXN2BQ14CS0 331 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 RNF19BQ6ZMZ0 732 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 HAUS6Q7Z4H7 955 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 GPBP1Q86WP2 473 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 TCEAL8Q8IYN2 117 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 MAML2Q8IZL2 1156 aaPredicted RBP12.68□□□□□ -0.38
USP3-214ENST00000559718 KCNG4Q8TDN1 519 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 BICD1Q96G01 975 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 SHDQ96IW2 340 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 AVENQ9NQS1 362 aaPredicted RBP12.68□□□□□ -0.38
USP3-214ENST00000559718 BLOC1S4Q9NUP1 217 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 GDE1Q9NZC3 331 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 KCND2Q9NZV8 630 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 CEP72Q9P209 647 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 MIA3Q5JRA6 1907 aa12.68□□□□□ -0.38
USP3-214ENST00000559718 FAM170BA6NMN3 283 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 LACTBL1A8MY62 500 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 PPEF2O14830 753 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 FAM189A1O60320 539 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 ECI2O75521 394 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 VNN2O95498 520 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 CLTAP09496 248 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 OR4Q2P0C623 313 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 GJA1P17302 382 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 FCARP24071 287 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 LRPAP1P30533 357 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 LIG4P49917 911 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 PFKPQ01813 784 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 PRKCQQ04759 706 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 TWF1Q12792 350 aa12.67□□□□□ -0.38
USP3-214ENST00000559718 GRM2Q14416 872 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms