RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 USP1O94782 785 aa12□□□□□ -0.49
LDLR-208ENST00000558518 KRT1P04264 644 aa12□□□□□ -0.49
LDLR-208ENST00000558518 SEZ6Q53EL9 994 aa12□□□□□ -0.49
LDLR-208ENST00000558518 XKR9Q5GH70 373 aa12□□□□□ -0.49
LDLR-208ENST00000558518 CDCA2Q69YH5 1023 aaPredicted RBP12□□□□□ -0.49
LDLR-208ENST00000558518 PALM2Q8IXS6 379 aa12□□□□□ -0.49
LDLR-208ENST00000558518 LRRN4Q8WUT4 740 aa12□□□□□ -0.49
LDLR-208ENST00000558518 DCLK3Q9C098 648 aa12□□□□□ -0.49
LDLR-208ENST00000558518 UNC45AQ9H3U1 944 aa12□□□□□ -0.49
LDLR-208ENST00000558518 ARL8BQ9NVJ2 186 aa12□□□□□ -0.49
LDLR-208ENST00000558518 DNPEPQ9ULA0 475 aa12□□□□□ -0.49
LDLR-208ENST00000558518 SEC23IPQ9Y6Y8 1000 aaKnown RBP12□□□□□ -0.49
LDLR-208ENST00000558518 GYS1P13807 737 aa12□□□□□ -0.49
LDLR-208ENST00000558518 KIF22Q14807 665 aa12□□□□□ -0.49
LDLR-208ENST00000558518 C11orf63Q6NUN7 778 aa12□□□□□ -0.49
LDLR-208ENST00000558518 HAUS6Q7Z4H7 955 aa12□□□□□ -0.49
LDLR-208ENST00000558518 CCDC89Q8N998 374 aa12□□□□□ -0.49
LDLR-208ENST00000558518 LENG9Q96B70 501 aa12□□□□□ -0.49
LDLR-208ENST00000558518 FAM20AQ96MK3 541 aa12□□□□□ -0.49
LDLR-208ENST00000558518 CFAP57Q96MR6 1250 aa12□□□□□ -0.49
LDLR-208ENST00000558518 FAM213AQ9BRX8 229 aa12□□□□□ -0.49
LDLR-208ENST00000558518 SLC13A1Q9BZW2 595 aa12□□□□□ -0.49
LDLR-208ENST00000558518 ZWILCHQ9H900 591 aa12□□□□□ -0.49
LDLR-208ENST00000558518 STOML1Q9UBI4 398 aa12□□□□□ -0.49
LDLR-208ENST00000558518 ADRB2P07550 413 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 CFHP08603 1231 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 TCF4P15884 667 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 TAS2R40P59535 323 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 BASP1P80723 227 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 MFSD5Q6N075 450 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 DCUN1D2Q6PH85 259 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 RHPN2Q8IUC4 686 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 EFCAB3Q8N7B9 438 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 PLEKHO2Q8TD55 490 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 CNKSR1Q969H4 720 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 FBXO28Q9NVF7 368 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 SLC17A7Q9P2U7 560 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 PPARGC1AQ9UBK2 798 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 TOGARAM1Q9Y4F4 1720 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 UBR2Q8IWV8 1755 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 STK10O94804 968 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 OAS1P00973 400 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 SKIP12755 728 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 ARFIP2P53365 341 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 CACNA2D1P54289 1103 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 TFDP1Q14186 410 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 CLUL1Q15846 466 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 MAPK6Q16659 721 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 ABCB5Q2M3G0 1257 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 TMEM270Q6UE05 265 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 ASRGL1Q7L266 308 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 PYROXD1Q8WU10 500 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 MAK16Q9BXY0 300 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 WHRNQ9P202 907 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 GTPBP10A4D1E9 387 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 IPO5O00410 1097 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 HNRNPDLO14979 420 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 ATP2A1O14983 1001 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 SMARCA1P28370 1054 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 PRELPP51888 382 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 EPHB1P54762 984 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 YWHAGP61981 247 aaKnown RBP eCLIP11.99□□□□□ -0.49
LDLR-208ENST00000558518 ZRSR2Q15696 482 aaKnown RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 KCNT1Q5JUK3 1230 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 OTOP1Q7RTM1 612 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 CERS5Q8N5B7 392 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 ZNF75CPQ92670 426 aaPredicted RBP11.99□□□□□ -0.49
LDLR-208ENST00000558518 TEKT1Q969V4 418 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 FAM111AQ96PZ2 611 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 THTPAQ9BU02 230 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 VAV3Q9UKW4 847 aa11.99□□□□□ -0.49
LDLR-208ENST00000558518 MYH14Q7Z406 1995 aaKnown RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 TLR3O15455 904 aaKnown RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 SP100P23497 879 aaPredicted RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 PGM1P36871 562 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 PPP2R5CQ13362 524 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 STAT4Q14765 748 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 SIX1Q15475 284 aaPredicted RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 SNRNP35Q16560 246 aaKnown RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 EGFL6Q8IUX8 553 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 TCP10LQ8TDR4 215 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 WDR60Q8WVS4 1066 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 BORCS6Q96GS4 357 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 CYP4F11Q9HBI6 524 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 OLFML3Q9NRN5 406 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 SMCHD1A6NHR9 2005 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 E2F8A0AVK6 867 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 MAP3K7O43318 606 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 ATP6V1C1P21283 382 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 MRPS35P82673 323 aaKnown RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 AP3B2Q13367 1082 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 RNF43Q68DV7 783 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 PHC3Q8NDX5 983 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 ACCSQ96QU6 501 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 ETAA1Q9NY74 926 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 GTF3C4Q9UKN8 822 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 CHMP2BQ9UQN3 213 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 CLRN2A0PK11 232 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 MEI4A8MW99 385 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 B2RBV5 119 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms