RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ZSCAN22P10073 491 aaPredicted RBP3.71□□□□□ -1.82
TRAV28-201ENST00000557548 MYL4P12829 197 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 NCAM1P13591 858 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 VIPR1P32241 457 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 CRHR1P34998 444 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 PTPN7P35236 360 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 DDIT3P35638 169 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 CASP2P42575 452 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 NCKAP1LP55160 1127 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 WNT3AP56704 352 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 TAF12Q16514 161 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 ZNF792Q3KQV3 632 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 PRAMEF14Q5SWL7 426 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 FYB2Q5VWT5 728 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 RRAGBQ5VZM2 374 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 JMJD6Q6NYC1 403 aaPredicted RBP3.71□□□□□ -1.82
TRAV28-201ENST00000557548 FBXO38Q6PIJ6 1188 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 RFX8Q6ZV50 586 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 UNC13DQ70J99 1090 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 BEND5Q7L4P6 421 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 MICU3Q86XE3 530 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 C1QL4Q86Z23 238 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 ZDHHC14Q8IZN3 488 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 ADGRG2Q8IZP9 1017 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 IPO4Q8TEX9 1081 aaKnown RBP3.71□□□□□ -1.82
TRAV28-201ENST00000557548 TRIM43Q96BQ3 446 aaPredicted RBP3.71□□□□□ -1.82
TRAV28-201ENST00000557548 LRRC46Q96FV0 321 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 ZSCAN31Q96LW9 406 aaPredicted RBP3.71□□□□□ -1.82
TRAV28-201ENST00000557548 PPM1MQ96MI6 270 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 GORASP1Q9BQQ3 440 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 DPH1Q9BZG8 443 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 VPS45Q9NRW7 570 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 ING3Q9NXR8 418 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 PDP2Q9P2J9 529 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 FBXO10Q9UK96 956 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 GJD2Q9UKL4 321 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 CRYL1Q9Y2S2 319 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 MED16Q9Y2X0 877 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 RPS6KL1Q9Y6S9 549 aa3.71□□□□□ -1.82
TRAV28-201ENST00000557548 TMEM233B4DJY2 109 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 EYA2O00167 538 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 GRM6O15303 877 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 IRAK2O43187 625 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 KLHL18O94889 574 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 CNOT4O95628 575 aaKnown RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 NDST3O95803 873 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ABHD16AO95870 558 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 KNG1P01042 644 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 HMGCRP04035 888 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 IL1R1P14778 569 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ATF2P15336 505 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 SERPINF1P36955 418 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 AFMP43652 599 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ALDH1A3P47895 512 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 CARSP49589 748 aaKnown RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ARL4CP56559 192 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 SESN2P58004 480 aaPredicted RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 NOMO3P69849 1222 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 G3BP1Q13283 466 aaKnown RBP eCLIP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ADAM15Q13444 863 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 SPARCL1Q14515 664 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 EIF4HQ15056 248 aaKnown RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 TIGD6Q17RP2 521 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 SLC44A4Q53GD3 710 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 CCDC93Q567U6 631 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 HYIQ5T013 277 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 L1TD1Q5T7N2 865 aaKnown RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 EMC10Q5UCC4 262 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 OLFML2BQ68BL8 750 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 LIN54Q6MZP7 749 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 RNF44Q7L0R7 432 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 RSRC2Q7L4I2 434 aaKnown RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 CLEC14AQ86T13 490 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 AGBL5Q8NDL9 886 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 MDM1Q8TC05 714 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 STYXQ8WUJ0 223 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 CASKIN2Q8WXE0 1202 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 USP13Q92995 863 aaPredicted RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 KIRREL1Q96J84 757 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 WRNIP1Q96S55 665 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 INO80BQ9C086 356 aaPredicted RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 C11orf54Q9H0W9 315 aaPredicted RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ZNF212Q9UDV6 495 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 ITGB1BP2Q9UKP3 347 aa3.7□□□□□ -1.82
TRAV28-201ENST00000557548 DYTNA2CJ06 578 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 C2orf78A6NCI8 922 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 CLCA1A8K7I4 914 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 PRSS47A8MTI9 375 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 IPO5O00410 1097 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 HNRNPDLO14979 420 aaKnown RBP3.69□□□□□ -1.82
TRAV28-201ENST00000557548 SNX2O60749 519 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 UNC5CO95185 931 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 MBD4O95243 580 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 TNFRSF6BO95407 300 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 GASTP01350 101 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 GNAI3P08754 354 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 SBK3P0C264 359 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 RAP2AP10114 183 aa3.69□□□□□ -1.82
TRAV28-201ENST00000557548 IL2RBP14784 551 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms