RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 IFT122Q9HBG6 1241 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CBX8Q9HC52 389 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 ANO10Q9NW15 660 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 DNMT3BQ9UBC3 853 aaKnown RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CCDC39Q9UFE4 941 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 USP25Q9UHP3 1055 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 FBXO2Q9UK22 296 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 LHX6Q9UPM6 363 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 COL4A3BPQ9Y5P4 624 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 GREB1Q4ZG55 1949 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 DSPP15924 2871 aaKnown RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 DMXL2Q8TDJ6 3036 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 COL4A2P08572 1712 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 ESPNB1AK53 854 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 K7ESF4 209 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 GIPC1O14908 333 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 ZIC2O95409 532 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-230ENST00000557427 HNRNPA1P09651 372 aaKnown RBP eCLIP13.71□□□□□ -0.21
SHMT2-230ENST00000557427 OR52Z1P0C646 297 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 SPATA31C1P0DKV0 1188 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 SYKP43405 635 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 CXCL12P48061 93 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 TRAPPC10P48553 1259 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 LAMTOR4Q0VGL1 99 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 EMC2Q15006 297 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 RTP2Q5QGT7 225 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 PSAPL1Q6NUJ1 521 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 FUT10Q6P4F1 479 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 MAEAQ7L5Y9 396 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 ZNF410Q86VK4 478 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 CATSPER3Q86XQ3 398 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 GPR65Q8IYL9 337 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 C4orf32Q8N8J7 132 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 RABGGTAQ92696 567 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 GAD1Q99259 594 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 CLSTN3Q9BQT9 956 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 INO80BQ9C086 356 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-230ENST00000557427 MINDY3Q9H8M7 445 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 C2orf42Q9NWW7 574 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 PCDHB6Q9Y5E3 794 aa13.71□□□□□ -0.21
SHMT2-230ENST00000557427 SRPRBQ9Y5M8 271 aaKnown RBP13.71□□□□□ -0.21
SHMT2-230ENST00000557427 SMG1Q96Q15 3661 aaKnown RBP13.71□□□□□ -0.22
SHMT2-230ENST00000557427 ARL5CA6NH57 179 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 AXIN1O15169 862 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ADAM12O43184 909 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 MED24O75448 989 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 LYPLA2O95372 231 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ADCY5O95622 1261 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 C8AP07357 584 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ZNF806P0C7X5 589 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 CHRNB1P11230 501 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ZNF165P49910 485 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 PTGDRQ13258 359 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 PPP2R5DQ14738 602 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 USP41Q3LFD5 358 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 PPM1LQ5SGD2 360 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ZSCAN30Q86W11 494 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ERMNQ8TAM6 284 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 TCP11Q8WWU5 503 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 PSPC1Q8WXF1 523 aaKnown RBP13.7□□□□□ -0.22
SHMT2-230ENST00000557427 GATA6Q92908 595 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 MCRS1Q96EZ8 462 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ZFP42Q96MM3 310 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 MTRQ99707 1265 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 IER2Q9BTL4 223 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ARRDC1-AS1Q9H2J1 176 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 ANKEF1Q9NU02 776 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 FAM13BQ9NYF5 915 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 KIAA1468Q9P260 1216 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 POLIQ9UNA4 740 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 PPME1Q9Y570 386 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 LAMA1P25391 3075 aa13.7□□□□□ -0.22
SHMT2-230ENST00000557427 TAF4O00268 1085 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 MAN2B1O00754 1011 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 ASAP2O43150 1006 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 FCARP24071 287 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 HOXA9P31269 272 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 CNR2P34972 360 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 MLH1P40692 756 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 SCNN1GP51170 649 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 GRM2Q14416 872 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 SLC5A9Q2M3M2 681 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 WDR44Q5JSH3 913 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 HEATR6Q6AI08 1181 aaKnown RBP13.69□□□□□ -0.22
SHMT2-230ENST00000557427 LONP2Q86WA8 852 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 RNF149Q8NC42 400 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 GSTCDQ8NEC7 633 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 FAM3CQ92520 227 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 DNASE1L2Q92874 299 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 NACC1Q96RE7 527 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 COLEC11Q9BWP8 271 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 DNAJC25Q9H1X3 360 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 SMOC1Q9H4F8 434 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 RRAGDQ9NQL2 400 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-230ENST00000557427 XPNPEP1Q9NQW7 623 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 CACNG4Q9UBN1 327 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 LRWD1Q9UFC0 647 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 HES2Q9Y543 173 aa13.69□□□□□ -0.22
SHMT2-230ENST00000557427 FLNBO75369 2602 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms