RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	NSUN6	Q8TEA1	469 aa	Known RBP	5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	NECTIN4	Q96NY8	510 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	KCNC2	Q96PR1	638 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	G6PC3	Q9BUM1	346 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	KRTAP9-3	Q9BYQ3	159 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	PUS7L	Q9H0K6	701 aa	Known RBP	5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	RANBP17	Q9H2T7	1088 aa	Known RBP	5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	EHMT1	Q9H9B1	1298 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	EBF1	Q9UH73	591 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	ISY1	Q9ULR0	285 aa	Known RBP	5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	MICAL3	Q7RTP6	2002 aa		5.51	□□□□□ -1.53
SCFD1-223	ENST00000557076	ADGRA3	Q8IWK6	1321 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	KMT2E	Q8IZD2	1858 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	C17orf102	A2RUQ5	167 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ANKRD33B	A6NCL7	494 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	PRDM1	O75626	825 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	HTR3B	O95264	441 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	CHRNA1	P02708	482 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	PF4	P02776	101 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	TSPY3	P0CV98	308 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	TSPY8	P0CW00	308 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	SRGAP2B	P0DMP2	458 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	GNAT1	P11488	350 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	TRIM27	P14373	513 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	GBP1	P32455	592 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	KIR2DL1	P43626	348 aa	Predicted RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	KIR2DL2	P43627	348 aa	Predicted RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	NOV	P48745	357 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	RNF4	P78317	190 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	TFAP4	Q01664	338 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ITIH3	Q06033	890 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	PWP1	Q13610	501 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ACAP1	Q15027	740 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	HSP90AB4P	Q58FF6	505 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ADGRF1	Q5T601	910 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ZSCAN25	Q6NSZ9	544 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ZC3H14	Q6PJT7	736 aa	Known RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	FAM43B	Q6ZT52	329 aa	Predicted RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	NLRX1	Q86UT6	975 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	DCLK2	Q8N568	766 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	SUMF1	Q8NBK3	374 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	VN1R2	Q8NFZ6	395 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	DCAF4	Q8WV16	495 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	CRELD1	Q96HD1	420 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	RHOV	Q96L33	236 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	DNAJC2	Q99543	621 aa	Known RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	C16orf70	Q9BSU1	422 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	ADAM7	Q9H2U9	754 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	RNPEP	Q9H4A4	650 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	CRTAC1	Q9NQ79	661 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	PAG1	Q9NWQ8	432 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	MRPL42	Q9Y6G3	142 aa	Known RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	PTPRS	Q13332	1948 aa		5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	CNOT1	A5YKK6	2376 aa	Known RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	COL4A4	P53420	1690 aa	Predicted RBP	5.5	□□□□□ -1.53
SCFD1-223	ENST00000557076	CHURC1-FNTB	B4DL54	471 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	C2CD4D	B7Z1M9	353 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	NRDC	O43847	1150 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	ADRB1	P08588	477 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	TGFB3	P10600	412 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	ATP5J	P18859	108 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	GNAT2	P19087	354 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	TEC	P42680	631 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	ADAM17	P78536	824 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	RBM10	P98175	930 aa	Known RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	NMI	Q13287	307 aa	Predicted RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	MPP2	Q14168	576 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	CELF3	Q5SZQ8	465 aa	Known RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	CWF19L1	Q69YN2	538 aa	Known RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	CES5A	Q6NT32	575 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	KCNV1	Q6PIU1	500 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	SLC30A10	Q6XR72	485 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	RTN4RL1	Q86UN2	441 aa	Predicted RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	RELL1	Q8IUW5	271 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	FAM9B	Q8IZU0	186 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	CLASRP	Q8N2M8	674 aa	Known RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	DAGLB	Q8NCG7	672 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	MAP6	Q96JE9	813 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	CHAMP1	Q96JM3	812 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	SIGLEC10	Q96LC7	697 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	TMEM74	Q96NL1	305 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	RTKN	Q9BST9	563 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	SGPP1	Q9BX95	441 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	HDAC8	Q9BY41	377 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	NGRN	Q9NPE2	291 aa	Known RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	IL17RB	Q9NRM6	502 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	ZMYM5	Q9UJ78	669 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	PCDHB12	Q9Y5F1	795 aa		5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	MYO5A	Q9Y4I1	1855 aa	Known RBP	5.49	□□□□□ -1.53
SCFD1-223	ENST00000557076	WDR19	Q8NEZ3	1342 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	ZFYVE26	Q68DK2	2539 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	PLIN4	Q96Q06	1357 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	RGS13	O14921	159 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	CSPG5	O95196	566 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	SLC3A2	P08195	630 aa	Known RBP	5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	CTSH	P09668	335 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	IFIT2	P09913	472 aa	Known RBP	5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	ZNF286B	P0CG31	522 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	STAG3L1	P0CL83	205 aa		5.48	□□□□□ -1.53
SCFD1-223	ENST00000557076	SMIM10L2A	P0DMW4	78 aa		5.48	□□□□□ -1.53

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