RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 COMMD8Q9NX08 183 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 SIK3Q9Y2K2 1263 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 PCDHGA11Q9Y5H2 935 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 CPDO75976 1380 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 CENPBD1B2RD01 187 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 DENRO43583 198 aaKnown RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 B4GALT4O60513 344 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 CYP1A2P05177 515 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 FGFR4P22455 802 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 HNRNPFP52597 415 aaKnown RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 AIMP1Q12904 312 aaKnown RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 TUBA3CQ13748 450 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 RASA2Q15283 850 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 TXNRD1Q16881 649 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 Q3C1V9 767 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 USP41Q3LFD5 358 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 COBLL1Q53SF7 1204 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 KIAA1755Q5JYT7 1200 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 AAGABQ6PD74 315 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 C4orf22Q6V702 233 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ENAHQ8N8S7 591 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ATP6V0D2Q8N8Y2 350 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 KBTBD3Q8NAB2 608 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 EXD1Q8NHP7 514 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 OSCP1Q8WVF1 389 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 BAP1Q92560 729 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 CCDC138Q96M89 665 aa14.57□□□□□ -0.08
SHMT2-226ENST00000556825 PAIP1Q9H074 479 aaKnown RBP14.57□□□□□ -0.08
SHMT2-226ENST00000556825 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 AP3B1O00203 1094 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 TXNDC9O14530 226 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 KIAA0391O15091 583 aaKnown RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 TMCC2O75069 709 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 CIB2O75838 187 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 C21orf59P57076 290 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 FOLH1Q04609 750 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 BTKQ06187 659 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 DNAJC3Q13217 504 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 APOFQ13790 326 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 BTBD8Q5XKL5 378 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PDXDC2PQ6P474 469 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 RIPOR1Q6ZS17 1223 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 RFX8Q6ZV50 586 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 AHI1Q8N157 1196 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 CSGALNACT2Q8N6G5 542 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 IP6K1Q92551 441 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 CNOT6LQ96LI5 555 aaKnown RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 FAM161BQ96MY7 647 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PALMDQ9NP74 551 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 CYLDQ9NQC7 956 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 CCDC177Q9NQR7 707 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 RABGEF1Q9UJ41 708 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 SNX24Q9Y343 169 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 LRRC37A3O60309 1634 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 KLRF2D3W0D1 207 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PSMA7O14818 248 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 SULT1C4O75897 302 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 ZBTB11O95625 1053 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 ATP6V1B1P15313 513 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 MUTP22033 750 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PTENP60484 403 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 ARHGAP4P98171 946 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 NTRK3Q16288 839 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 TIGD2Q4W5G0 525 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 ZFYVE27Q5T4F4 411 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 EGFLAMQ63HQ2 1017 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 DHDDSQ86SQ9 333 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 ZNF598Q86UK7 904 aaKnown RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 WASF1Q92558 559 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 FBXL18Q96ME1 805 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 CEP63Q96MT8 703 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 OLFM1Q99784 485 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PYM1Q9BRP8 204 aaKnown RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PHF20Q9BVI0 1012 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 KLC2Q9H0B6 622 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 FAM207AQ9NSI2 230 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-226ENST00000556825 HACD3Q9P035 362 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PARP2Q9UGN5 583 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 ZBTB21Q9ULJ3 1066 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PADI4Q9UM07 663 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 NDUFB9Q9Y6M9 179 aa14.56□□□□□ -0.08
SHMT2-226ENST00000556825 PFASO15067 1338 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 RSPH10B2B2RC85 870 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 IDH3BO43837 385 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 TNFAIP8O95379 198 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 STAMBPO95630 424 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 RSPH10BP0C881 870 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 RARBP10826 455 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 PON1P27169 355 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 KRT76Q01546 638 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 EDRF1Q3B7T1 1238 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 TDRD12Q587J7 1177 aaKnown RBP14.55□□□□□ -0.08
SHMT2-226ENST00000556825 PEX26Q7Z412 305 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 NLRX1Q86UT6 975 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 RAVER1Q8IY67 606 aaKnown RBP14.55□□□□□ -0.08
SHMT2-226ENST00000556825 LILRB1Q8NHL6 650 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-226ENST00000556825 DPF3Q92784 378 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 NUF2Q9BZD4 464 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 EDEM3Q9BZQ6 932 aa14.55□□□□□ -0.08
SHMT2-226ENST00000556825 GRHL1Q9NZI5 618 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms