RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 TKTP29401 623 aaKnown RBP13.11□□□□□ -0.31
SRP54-206ENST00000555317 LRPAP1P30533 357 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 BRCC3P46736 316 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 CYP2J2P51589 502 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 TFAMQ00059 246 aaKnown RBP13.11□□□□□ -0.31
SRP54-206ENST00000555317 ITIH3Q06033 890 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 EHHADHQ08426 723 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 KCNC3Q14003 757 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 SMAD2Q15796 467 aaKnown RBP13.11□□□□□ -0.31
SRP54-206ENST00000555317 KNOP1Q1ED39 458 aaKnown RBP13.11□□□□□ -0.31
SRP54-206ENST00000555317 BMT2Q1RMZ1 405 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 RARS2Q5T160 578 aaKnown RBP13.11□□□□□ -0.31
SRP54-206ENST00000555317 SPATA1Q5VX52 437 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 DSTYKQ6XUX3 929 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 PALB2Q86YC2 1186 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 NT5DC4Q86YG4 428 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 C3orf58Q8NDZ4 430 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 SLC22A17Q8WUG5 538 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 MAN1C1Q9NR34 630 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 AGPAT3Q9NRZ7 376 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 HSPBP1Q9NZL4 362 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 PRKAG3Q9UGI9 489 aa13.11□□□□□ -0.31
SRP54-206ENST00000555317 PLXNA3P51805 1871 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 MTCL1Q9Y4B5 1905 aaKnown RBP13.1□□□□□ -0.31
SRP54-206ENST00000555317 H7C4K7 107 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 KINO60870 393 aaKnown RBP13.1□□□□□ -0.31
SRP54-206ENST00000555317 SMC2O95347 1197 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 TMEM191BP0C7N4 346 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 PRR29P0C7W0 189 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 PAX3P23760 479 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 GUCY2FP51841 1108 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 DPYDQ12882 1025 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 SURF1Q15526 300 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 ZBTB6Q15916 424 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 LIN9Q5TKA1 542 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 CRELD2Q6UXH1 353 aaPredicted RBP13.1□□□□□ -0.31
SRP54-206ENST00000555317 USP37Q86T82 979 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 LNX1Q8TBB1 728 aaPredicted RBP13.1□□□□□ -0.31
SRP54-206ENST00000555317 SUSD3Q96L08 255 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 RIPOR3Q96MK2 946 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 ZNF560Q96MR9 790 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 NECTIN4Q96NY8 510 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 NECAB3Q96P71 396 aaPredicted RBP13.1□□□□□ -0.31
SRP54-206ENST00000555317 RMND1Q9NWS8 449 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 DPP3Q9NY33 737 aa13.1□□□□□ -0.31
SRP54-206ENST00000555317 TNFRSF10AO00220 468 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 CLIC2O15247 247 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 C1RP00736 705 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 ODC1P11926 461 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 HOXD13P35453 343 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 MTHFRP42898 656 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 STK4Q13043 487 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 CBX2Q14781 532 aaPredicted RBP13.09□□□□□ -0.31
SRP54-206ENST00000555317 SNRNP35Q16560 246 aaKnown RBP13.09□□□□□ -0.31
SRP54-206ENST00000555317 ATAT1Q5SQI0 421 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 VARS2Q5ST30 1063 aaKnown RBP13.09□□□□□ -0.31
SRP54-206ENST00000555317 C9orf57Q5W0N0 161 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 ZNF280DQ6N043 979 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 SYCE2Q6PIF2 218 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 ADHFE1Q8IWW8 467 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 FMR1NBQ8N0W7 255 aaPredicted RBP13.09□□□□□ -0.31
SRP54-206ENST00000555317 XXYLT1Q8NBI6 393 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 KIAA0895Q8NCT3 520 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 ANKRD36BP1Q96IX9 119 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 ADAM7Q9H2U9 754 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 PLEKHA4Q9H4M7 779 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 MTRRQ9UBK8 725 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 PCDHB8Q9UN66 801 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 CDY1Q9Y6F8 540 aa13.09□□□□□ -0.31
SRP54-206ENST00000555317 SCN1AP35498 2009 aa13.08□□□□□ -0.31
SRP54-206ENST00000555317 TGM5O43548 720 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 CALUO43852 315 aaPredicted RBP13.08□□□□□ -0.32
SRP54-206ENST00000555317 EXOC3O60645 756 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 RHOBTB3O94955 611 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 TNNC2P02585 160 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 SPATA31D3P0C874 917 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 OR1D2P34982 312 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 PNPLA4P41247 253 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 TAF6P49848 677 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 PNOCQ13519 176 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 KCNB1Q14721 858 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 CTXN3Q4LDR2 81 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 CD300LGQ6UXG3 332 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 TMC5Q6UXY8 1006 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 SPATA31D4Q6ZUB0 917 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 CBWD2Q8IUF1 395 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 EFCAB13Q8IY85 973 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 C12orf76Q8N812 135 aaPredicted RBP13.08□□□□□ -0.32
SRP54-206ENST00000555317 KREMEN2Q8NCW0 462 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 ZSWIM2Q8NEG5 633 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 HDAC7Q8WUI4 952 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 FNBP1Q96RU3 617 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 CLSTN3Q9BQT9 956 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 PDE11AQ9HCR9 933 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 TSHZ2Q9NRE2 1034 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 BACE2Q9Y5Z0 518 aa13.08□□□□□ -0.32
SRP54-206ENST00000555317 TGFB1I1O43294 461 aa13.07□□□□□ -0.32
SRP54-206ENST00000555317 PRPF40AO75400 957 aaKnown RBP13.07□□□□□ -0.32
SRP54-206ENST00000555317 CLSTN1O94985 981 aa13.07□□□□□ -0.32
SRP54-206ENST00000555317 KRT19P08727 400 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms