RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	FOXP4	Q8IVH2	680 aa	Predicted RBP	7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	LILRB2	Q8N423	598 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	KLHDC9	Q8NEP7	349 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	LPIN2	Q92539	896 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	C12orf42	Q96LP6	360 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	FEZ1	Q99689	392 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	MOV10L1	Q9BXT6	1211 aa	Known RBP	7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	DHX36	Q9H2U1	1008 aa	Known RBP	7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	C9orf78	Q9NZ63	289 aa	Predicted RBP	7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	CTNNA3	Q9UI47	895 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	DSE	Q9UL01	958 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	PCDHA9	Q9Y5H5	950 aa		7.14	□□□□□ -1.27
ATXN3-223	ENST00000553686	DOCK3	Q8IZD9	2030 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	GPR75-ASB3	A0A0A6YYF3	556 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	TMEM221	A6NGB7	291 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686		M0R296	226 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	GRM8	O00222	908 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	LPXN	O60711	386 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	CD4	P01730	458 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	LTF	P02788	710 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	LDHC	P07864	332 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	FGFR2	P21802	821 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	RPL13	P26373	211 aa	Known RBP	7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	CST5	P28325	142 aa	Predicted RBP	7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	RRP1B	Q14684	758 aa	Known RBP	7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	CCSAP	Q6IQ19	270 aa	Predicted RBP	7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	ASCL5	Q7RTU5	278 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	MB21D1	Q8N884	522 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	PCDH19	Q8TAB3	1148 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	UHMK1	Q8TAS1	419 aa	Known RBP	7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	NEK9	Q8TD19	979 aa		7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	THAP3	Q8WTV1	239 aa	Predicted RBP	7.13	□□□□□ -1.27
ATXN3-223	ENST00000553686	ATRX	P46100	2492 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	RIF1	Q5UIP0	2472 aa	Known RBP	7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	PRRC2B	Q5JSZ5	2229 aa	Known RBP	7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686		A0A1B0GUL7	405 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	MED19	A0JLT2	244 aa	Predicted RBP	7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	DUSP11	O75319	330 aa	Known RBP	7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	CABYR	O75952	493 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	ASGR1	P07306	291 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	SRGAP2C	P0DJJ0	459 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	NAT1	P18440	290 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	COG2	Q14746	738 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	LRRC24	Q50LG9	513 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	BEND3	Q5T5X7	828 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	NT5DC1	Q5TFE4	455 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	ATF7IP	Q6VMQ6	1270 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	G2E3	Q7L622	706 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	HERC6	Q8IVU3	1022 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	CCDC146	Q8IYE0	955 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	VGLL2	Q8N8G2	317 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	ZSWIM2	Q8NEG5	633 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	FBXW5	Q969U6	566 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	FSD1	Q9BTV5	496 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	SPATC1L	Q9H0A9	340 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	CATSPERZ	Q9NTU4	200 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	MUTYH	Q9UIF7	546 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	CHD7	Q9P2D1	2997 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	CACNA1H	O95180	2353 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	WDFY4	Q6ZS81	3184 aa		7.12	□□□□□ -1.27
ATXN3-223	ENST00000553686	RFX7	Q2KHR2	1363 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	SYNRG	Q9UMZ2	1314 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	USP34	Q70CQ2	3546 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	CCDC163	A0A0D9SF12	145 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	PRR23A	A6NEV1	266 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686		H0Y858	1186 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	DDX3X	O00571	662 aa	Known RBP eCLIP	7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	NCK2	O43639	380 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	CRTAM	O95727	393 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	SLC25A27	O95847	323 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	AVPR2	P30518	371 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	RHBDL3	P58872	404 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	GSTO1	P78417	241 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	ADAM9	Q13443	819 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	PLS1	Q14651	629 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	BMS1	Q14692	1282 aa	Known RBP	7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	PTPRO	Q16827	1216 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	TMC5	Q6UXY8	1006 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	OSTM1	Q86WC4	334 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	MSL3	Q8N5Y2	521 aa	Known RBP	7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	TSPYL6	Q8N831	410 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	NKD2	Q969F2	451 aa	Predicted RBP	7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	RELT	Q969Z4	430 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	CLIC6	Q96NY7	704 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	KIAA1683	Q9H0B3	1180 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	SIL1	Q9H173	461 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	ZSWIM4	Q9H7M6	989 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	TLR9	Q9NR96	1032 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	HSPBP1	Q9NZL4	362 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	ABCF2	Q9UG63	623 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	NDOR1	Q9UHB4	597 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	ZBTB21	Q9ULJ3	1066 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	WASF3	Q9UPY6	502 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	TELO2	Q9Y4R8	837 aa		7.11	□□□□□ -1.27
ATXN3-223	ENST00000553686	ROBO3	Q96MS0	1386 aa		7.1	□□□□□ -1.27
ATXN3-223	ENST00000553686	TPR	P12270	2363 aa	Known RBP	7.1	□□□□□ -1.27
ATXN3-223	ENST00000553686	MROH7-TTC4	A0A0A0MT08	1334 aa		7.1	□□□□□ -1.27
ATXN3-223	ENST00000553686	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	7.1	□□□□□ -1.27
ATXN3-223	ENST00000553686	TCRBV5S4A2T	A0A5A2	114 aa		7.1	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms