RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	BOC	Q9BWV1	1114 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	DEF6	Q9H4E7	631 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	SMURF1	Q9HCE7	757 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	CATSPERZ	Q9NTU4	200 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	VPS28	Q9UK41	221 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	MYRF	Q9Y2G1	1151 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	SPO11	Q9Y5K1	396 aa		4.7	□□□□□ -1.66
USP44-208	ENST00000552440	SH3D21	A4FU49	640 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440		H7C1D1	291 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	INO80B-WBP1	J3KQ70	363 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ZNF561-AS1	K7EIQ3	104 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440		K7ESM1	405 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	DDX3X	O00571	662 aa	Known RBP eCLIP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	FFAR3	O14843	346 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	B3GALNT1	O75752	331 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	HNRNPL	P14866	589 aa	Known RBP eCLIP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	AGXT	P21549	392 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	MC4R	P32245	332 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ACTN2	P35609	894 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	HSPA7	P48741	367 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ITGA8	P53708	1063 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TPD52	P55327	224 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	UBXN2A	P68543	259 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	KIF23	Q02241	960 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ALDH6A1	Q02252	535 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	MPEG1	Q2M385	716 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	UAP1L1	Q3KQV9	507 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TATDN1	Q6P1N9	297 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ABRAXAS1	Q6UWZ7	409 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	MAEA	Q7L5Y9	396 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	COL23A1	Q86Y22	540 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	LIX1L	Q8IVB5	337 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TP53I13	Q8NBR0	393 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	RFFL	Q8WZ73	363 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	PEX11G	Q96HA9	241 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	MAEL	Q96JY0	434 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	PTCHD1	Q96NR3	888 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ORAI2	Q96SN7	254 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	GPATCH1	Q9BRR8	931 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	CNPPD1	Q9BV87	410 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ARHGAP39	Q9C0H5	1083 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	MS4A5	Q9H3V2	200 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	GRPEL1	Q9HAV7	217 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TRPV4	Q9HBA0	871 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	COMMD8	Q9NX08	183 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	DNAJC28	Q9NX36	388 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	BLOC1S6	Q9UL45	172 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	C19orf53	Q9UNZ5	99 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	NOC2L	Q9Y3T9	749 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	KNSTRN	Q9Y448	316 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ZNF711	Q9Y462	761 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	MPHOSPH10	O00566	681 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ACKR2	O00590	384 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	DVL2	O14641	736 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	DTNB	O60941	627 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	KRT37	O76014	449 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	SLC4A1	P02730	911 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	AMY2A	P04746	511 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	SLC9A1	P19634	815 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	AMY2B	P19961	511 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	NCKAP1L	P55160	1127 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	PRR5	P85299	388 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TLE2	Q04725	743 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	LSAMP	Q13449	338 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	CUL4A	Q13619	759 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	BECN1	Q14457	450 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	KIR3DS1	Q14943	382 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	SLMAP	Q14BN4	828 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ZNF827	Q17R98	1081 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ARL13B	Q3SXY8	428 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	GALNT17	Q6IS24	598 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	LIPI	Q6XZB0	460 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	OSTM1	Q86WC4	334 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	NBPF5P	Q86XG9	351 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	CPNE8	Q86YQ8	564 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	EPHX4	Q8IUS5	362 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	CPO	Q8IVL8	374 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TRMT2A	Q8IZ69	625 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TSPYL6	Q8N831	410 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ZNF610	Q8N9Z0	462 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	SYT8	Q8NBV8	401 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TDRD7	Q8NHU6	1098 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ADAMTS15	Q8TE58	950 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	FNIP1	Q8TF40	1166 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TGFBRAP1	Q8WUH2	860 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	APIP	Q96GX9	242 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ELF4	Q99607	663 aa	Predicted RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	GPR20	Q99678	358 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	KCNJ15	Q99712	375 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	PYM1	Q9BRP8	204 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	BDH2	Q9BUT1	245 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	UNK	Q9C0B0	810 aa	Known RBP	4.69	□□□□□ -1.66
USP44-208	ENST00000552440	PREB	Q9HCU5	417 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	HAUS2	Q9NVX0	235 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	TUBD1	Q9UJT1	453 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	GPR45	Q9Y5Y3	372 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	ADAMTS20	P59510	1910 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	CCDC180	Q9P1Z9	1646 aa		4.69	□□□□□ -1.66
USP44-208	ENST00000552440	SLC12A8	A0AV02	714 aa		4.68	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms