RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ANO9A1A5B4 782 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 SOX1O00570 391 aaPredicted RBP22.87■■□□□ 1.25
VPS29-206ENST00000549578 STX10O60499 249 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 PHACTR2O75167 634 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 B3GAT3O94766 335 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 ATP1A3P13637 1013 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 GTF2H1P32780 548 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 BMPR1AP36894 532 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 KCNH2Q12809 1159 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 SLC39A11Q8N1S5 342 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 TUBGCP2Q9BSJ2 902 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 ANP32EQ9BTT0 268 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 TAB2Q9NYJ8 693 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 AGAP1Q9UPQ3 857 aa22.87■■□□□ 1.25
VPS29-206ENST00000549578 GOLGA6L19H0YKK7 550 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 PIRO00625 290 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 CST3P01034 146 aaPredicted RBP22.86■■□□□ 1.25
VPS29-206ENST00000549578 PRKCSHP14314 528 aaPredicted RBP22.86■■□□□ 1.25
VPS29-206ENST00000549578 MXI1P50539 228 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 ERVK-21P61565 698 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 KRT31Q15323 416 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 EPC2Q52LR7 807 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 DCLRE1AQ6PJP8 1040 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 CD300LGQ6UXG3 332 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 GAS2L3Q86XJ1 694 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 COLEC11Q9BWP8 271 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 SPG21Q9NZD8 308 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 RWDD3Q9Y3V2 267 aa22.86■■□□□ 1.25
VPS29-206ENST00000549578 SCN1AP35498 2009 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 VNN1O95497 513 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 CDK11BP21127 795 aaKnown RBP22.85■■□□□ 1.25
VPS29-206ENST00000549578 FMO5P49326 533 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 RBP5P82980 135 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 MAN2A1Q16706 1144 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 KRT39Q6A163 491 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 TAS1R2Q8TE23 839 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 IGSF21Q96ID5 467 aa22.85■■□□□ 1.25
VPS29-206ENST00000549578 AFPP02771 609 aaKnown RBP22.84■■□□□ 1.25
VPS29-206ENST00000549578 NCOA4Q13772 614 aa22.84■■□□□ 1.25
VPS29-206ENST00000549578 KLHL23Q8NBE8 558 aa22.84■■□□□ 1.25
VPS29-206ENST00000549578 ADAM28Q9UKQ2 775 aa22.84■■□□□ 1.25
VPS29-206ENST00000549578 TMEM189-UBE2V1I3L0A0 370 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 TADA2AO75478 443 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 FGF18O76093 207 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 HLA-DRAP01903 254 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 PPM1AP35813 382 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 PIK3CAP42336 1068 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 MYL6P60660 151 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 TPM4P67936 248 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 MYL7Q01449 175 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 TRPC3Q13507 836 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 MIIPQ5JXC2 388 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 ARNTL2Q8WYA1 636 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 ELMO3Q96BJ8 720 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 TMEM169Q96HH4 297 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 LRCH3Q96II8 777 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 SAMD11Q96NU1 681 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 VPS16Q9H269 839 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 LIMA1Q9UHB6 759 aaKnown RBP22.83■■□□□ 1.25
VPS29-206ENST00000549578 R3HCC1Q9Y3T6 440 aaKnown RBP22.83■■□□□ 1.25
VPS29-206ENST00000549578 NUB1Q9Y5A7 615 aa22.83■■□□□ 1.25
VPS29-206ENST00000549578 C5orf67F2Z3F1 127 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 I3L4J1 428 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 SPTLC1O15269 473 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 LRRN2O75325 713 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 BRCC3P46736 316 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 LILRA4P59901 499 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 VWA3BQ502W6 1294 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 LRRC52Q8N7C0 313 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 ANKRD20A12PQ8NF67 263 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 HPDLQ96IR7 371 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 ZNF560Q96MR9 790 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 PLVAPQ9BX97 442 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.82■■□□□ 1.24
VPS29-206ENST00000549578 CDH23Q9H251 3354 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 CARNS1A5YM72 827 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 PES1O00541 588 aaKnown RBP22.82■■□□□ 1.24
VPS29-206ENST00000549578 TAF6P49848 677 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 APTXQ7Z2E3 356 aaKnown RBP22.82■■□□□ 1.24
VPS29-206ENST00000549578 FBXL13Q8NEE6 735 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 FBXO22Q8NEZ5 403 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 SEMA4DQ92854 862 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 VN1R3Q9BXE9 311 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 GPR62Q9BZJ7 368 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 RBSNQ9H1K0 784 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 NDST4Q9H3R1 872 aa22.82■■□□□ 1.24
VPS29-206ENST00000549578 ALG13Q9NP73 1137 aaKnown RBP22.82■■□□□ 1.24
VPS29-206ENST00000549578 PLXNA4Q9HCM2 1894 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 EPOPA6NHQ4 379 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 N4BP1O75113 896 aaKnown RBP22.81■■□□□ 1.24
VPS29-206ENST00000549578 CLSTN1O94985 981 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 RB1P06400 928 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 COPB1P53618 953 aaKnown RBP22.81■■□□□ 1.24
VPS29-206ENST00000549578 TIGD5Q53EQ6 642 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 FUT10Q6P4F1 479 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 PI4K2AQ9BTU6 479 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 C11orf84Q9BUA3 381 aaPredicted RBP22.81■■□□□ 1.24
VPS29-206ENST00000549578 XYLT2Q9H1B5 865 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 ZNF576Q9H609 170 aa22.81■■□□□ 1.24
VPS29-206ENST00000549578 SF3B1O75533 1304 aaKnown RBP eCLIP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms