RNA–Protein interactions for RNA: ENST00000545901.5

HMBS-223, Transcript of hydroxymethylbilane synthase, human

TSL 1 (best)

Gene HMBS, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMBS-223	ENST00000545901	LRRC52	Q8N7C0	313 aa		18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	TGS1	Q96RS0	853 aa	Known RBP	18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	COLEC11	Q9BWP8	271 aa		18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	GOLGA2P5	Q9HBQ8	144 aa		18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	LIMA1	Q9UHB6	759 aa	Known RBP	18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	SIX4	Q9UIU6	781 aa		18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	COQ4	Q9Y3A0	265 aa		18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	18.8	■□□□□ 0.6
HMBS-223	ENST00000545901	TTC28	Q96AY4	2481 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	GOLGA6L19	H0YKK7	550 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	AFP	P02771	609 aa	Known RBP	18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	MTIF2	P46199	727 aa	Known RBP	18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	OR1G1	P47890	313 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	GCLM	P48507	274 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	MXI1	P50539	228 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	CLCNKB	P51801	687 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	KCNH2	Q12809	1159 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	TDRD10	Q5VZ19	366 aa	Known RBP	18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	LUZP1	Q86V48	1076 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	SLC39A11	Q8N1S5	342 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	TIFA	Q96CG3	184 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	ZNF560	Q96MR9	790 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	TUBGCP2	Q9BSJ2	902 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	NKX2-4	Q9H2Z4	354 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	VRTN	Q9H8Y1	702 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	SLC28A3	Q9HAS3	691 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	MARCH5	Q9NX47	278 aa		18.79	■□□□□ 0.6
HMBS-223	ENST00000545901	ARHGEF15	O94989	841 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	EFEMP2	O95967	443 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	ITGB3	P05106	788 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	CDK11B	P21127	795 aa	Known RBP	18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	POLR2B	P30876	1174 aa	Known RBP	18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	ATIC	P31939	592 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	FMO5	P49326	533 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	AARS	P49588	968 aa	Known RBP eCLIP	18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	GUCY2F	P51841	1108 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	PLCB3	Q01970	1234 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	BIRC3	Q13489	604 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	KRT31	Q15323	416 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	PPP2R2D	Q66LE6	453 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	TAF4B	Q92750	862 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	IGSF21	Q96ID5	467 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	CDX2	Q99626	313 aa	Predicted RBP	18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	PAAF1	Q9BRP4	392 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	SPG21	Q9NZD8	308 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	ADAM28	Q9UKQ2	775 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	CIT	O14578	2027 aa		18.78	■□□□□ 0.6
HMBS-223	ENST00000545901	GTPBP10	A4D1E9	387 aa	Known RBP	18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	B3GAT3	O94766	335 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	TPM2	P07951	284 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	CETN1	Q12798	172 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	ELAVL2	Q12926	359 aa	Known RBP	18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	TRPC3	Q13507	836 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	NCOA4	Q13772	614 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	CBWD6	Q4V339	395 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	VWA3B	Q502W6	1294 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	EPC2	Q52LR7	807 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	CBWD3	Q5JTY5	395 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	MIIP	Q5JXC2	388 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	CBWD5	Q5RIA9	395 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	CD300LG	Q6UXG3	332 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	FBXL13	Q8NEE6	735 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	C11orf84	Q9BUA3	381 aa	Predicted RBP	18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	NDST4	Q9H3R1	872 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	AGAP1	Q9UPQ3	857 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	LZTS1	Q9Y250	596 aa		18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	PRG3	Q9Y2Y8	225 aa	Predicted RBP	18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	R3HCC1	Q9Y3T6	440 aa	Known RBP	18.77	■□□□□ 0.6
HMBS-223	ENST00000545901	TRAPPC3	O43617	180 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	PHACTR2	O75167	634 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	KIF4A	O95239	1232 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	VNN1	O95497	513 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	CTNNB1	P35222	781 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	TAF6	P49848	677 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	LILRA4	P59901	499 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	UBE3A	Q05086	875 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	MYO1E	Q12965	1108 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	HSP90AA4P	Q58FG1	418 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	APTX	Q7Z2E3	356 aa	Known RBP	18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	CREBRF	Q8IUR6	639 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	RNF168	Q8IYW5	571 aa	Predicted RBP	18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	C3orf58	Q8NDZ4	430 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	TMEM169	Q96HH4	297 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	FAXDC2	Q96IV6	333 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	FAM84A	Q96KN4	292 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	C17orf80	Q9BSJ5	609 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	XYLT2	Q9H1B5	865 aa		18.76	■□□□□ 0.59
HMBS-223	ENST00000545901	SF3B1	O75533	1304 aa	Known RBP eCLIP	18.75	■□□□□ 0.59	9e-6	■■■■■ 68.9
HMBS-223	ENST00000545901	ARHGEF37	A1IGU5	675 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	TULP1	O00294	542 aa	Predicted RBP	18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	PPEF2	O14830	753 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	TADA2A	O75478	443 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	CST3	P01034	146 aa	Predicted RBP	18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	HLA-DRA	P01903	254 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	KRT19	P08727	400 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	ATP1A3	P13637	1013 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	PBX3	P40426	434 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	COPB1	P53618	953 aa	Known RBP	18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	MYL7	Q01449	175 aa		18.75	■□□□□ 0.59
HMBS-223	ENST00000545901	KRT17	Q04695	432 aa		18.75	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms