RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 WDR27A2RRH5 827 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 PODXLO00592 558 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 TBC1D4O60343 1298 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 LRRN2O75325 713 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 POU2F2P09086 479 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 HARSP12081 509 aaKnown RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 KCNE1P15382 129 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 RFX1P22670 979 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 GUCY2CP25092 1073 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 ATP2C1P98194 919 aaPredicted RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 ROR1Q01973 937 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 SLC10A6Q3KNW5 377 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 PABPC1LQ4VXU2 614 aaKnown RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 SEZ6Q53EL9 994 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 SPECC1Q5M775 1068 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 VARS2Q5ST30 1063 aaKnown RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 HYIQ5T013 277 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 SLC8B1Q6J4K2 584 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 NPAS3Q8IXF0 933 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 TMEM130Q8N3G9 435 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 SYT2Q8N9I0 419 aaPredicted RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 TMEM161BQ8NDZ6 487 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 ING5Q8WYH8 240 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 C18orf25Q96B23 403 aaPredicted RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 FOXQ1Q9C009 403 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 C17orf75Q9HAS0 396 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 SLC38A7Q9NVC3 462 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 DLGAP2Q9P1A6 1054 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 CNTN3Q9P232 1028 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 SIT1Q9Y3P8 196 aa9.26□□□□□ -0.93
USP28-215ENST00000545608 MTCL1Q9Y4B5 1905 aaKnown RBP9.26□□□□□ -0.93
USP28-215ENST00000545608 WDFY4Q6ZS81 3184 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 NPHP3-ACAD11A0A0J9YXS1 232 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 ARHGEF37A1IGU5 675 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 VWA3AA6NCI4 1184 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 SYN3O14994 580 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 AP1G2O75843 785 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 ABLIM3O94929 683 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 CD2BP2O95400 341 aaKnown RBP9.25□□□□□ -0.93
USP28-215ENST00000545608 SEC24AO95486 1093 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 RHOP08100 348 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 PLA2G4BP0C869 781 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 PLS3P13797 630 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 GLULP15104 373 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 RPL9P32969 192 aaKnown RBP9.25□□□□□ -0.93
USP28-215ENST00000545608 GCGRP47871 477 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 SLC12A3P55017 1021 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 ARPP19P56211 112 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 STARD6P59095 220 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 SNW1Q13573 536 aaKnown RBP9.25□□□□□ -0.93
USP28-215ENST00000545608 MRPL58Q14197 206 aaKnown RBP9.25□□□□□ -0.93
USP28-215ENST00000545608 RABEP1Q15276 862 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 SLC5A9Q2M3M2 681 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 SLC44A4Q53GD3 710 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 RILPL1Q5EBL4 403 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 MTSS1LQ765P7 747 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 RTL10Q7L3V2 364 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 ZNF461Q8TAF7 563 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 MCRS1Q96EZ8 462 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 TMX3Q96JJ7 454 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 KXD1Q9BQD3 176 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 TIPINQ9BVW5 301 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 PLA2G2FQ9BZM2 168 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 HAPLN2Q9GZV7 340 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 KCNH3Q9ULD8 1083 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 MRPS23Q9Y3D9 190 aaKnown RBP9.25□□□□□ -0.93
USP28-215ENST00000545608 NUB1Q9Y5A7 615 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 RIF1Q5UIP0 2472 aaKnown RBP9.25□□□□□ -0.93
USP28-215ENST00000545608 VWA8A3KMH1 1905 aa9.25□□□□□ -0.93
USP28-215ENST00000545608 TOM1L1O75674 476 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 LRG1P02750 347 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 MAPTP10636 758 aaKnown RBP9.24□□□□□ -0.93
USP28-215ENST00000545608 ATF2P15336 505 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 PTPN2P17706 415 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 GJB2P29033 226 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 ELF1P32519 619 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 SMTNP53814 917 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 SPAG1Q07617 926 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 MCL1Q07820 350 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 STRN3Q13033 797 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 QPCTQ16769 361 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 CTXN3Q4LDR2 81 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 TMEM119Q4V9L6 283 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 ARSHQ5FYA8 562 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 ZPBP2Q6X784 338 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 TCEAL8Q8IYN2 117 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 ADSSL1Q8N142 457 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 PJA1Q8NG27 643 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 LRRC15Q8TF66 581 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 TCEAL4Q96EI5 215 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 SHDQ96IW2 340 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 SUSD3Q96L08 255 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 CYP4F11Q9HBI6 524 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 AVENQ9NQS1 362 aaPredicted RBP9.24□□□□□ -0.93
USP28-215ENST00000545608 ANKFY1Q9P2R3 1169 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 TUBGCP4Q9UGJ1 667 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 RABGEF1Q9UJ41 708 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 FBXL5Q9UKA1 691 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 MTF2Q9Y483 593 aaPredicted RBP9.24□□□□□ -0.93
USP28-215ENST00000545608 KIF3AQ9Y496 699 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms