RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 TMEM62Q0P6H9 643 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 TRIM32Q13049 653 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 KCTD19Q17RG1 926 aaPredicted RBP15.35■□□□□ 0.05
VPS33A-209ENST00000544349 RUFY4Q6ZNE9 571 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 TMEM192Q8IY95 271 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 RPF1Q9H9Y2 349 aaKnown RBP15.35■□□□□ 0.05
VPS33A-209ENST00000544349 GOLGA6BA6NDN3 693 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CYP26A1O43174 497 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 TREHO43280 583 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 B4GALT4O60513 344 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 KPNA6O60684 536 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 SGPL1O95470 568 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 TNFRSF8P28908 595 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 NCOA4Q13772 614 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 DUOXA2Q1HG44 320 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 SPOPLQ6IQ16 392 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 SLC20A1Q8WUM9 679 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 KRT12Q99456 494 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CFHR5Q9BXR6 569 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 GCOM2Q9BZD3 368 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CALCOCO1Q9P1Z2 691 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 INTUQ9ULD6 942 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 A0A1B0GUA9 196 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 C17orf102A2RUQ5 167 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 SEPT4O43236 478 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 HEXIM1O94992 359 aaKnown RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 KIF4AO95239 1232 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 IL18RAPO95256 599 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CST3P01034 146 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CLTAP09496 248 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 FAM153BP0C7A2 387 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 STAG3L1P0CL83 205 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 HOXC8P31273 242 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CARSP49589 748 aaKnown RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 APLP1P51693 650 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 EPHB4P54760 987 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 ZNF200P98182 395 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 POU5F1Q01860 360 aaKnown RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CACNB2Q08289 660 aaPredicted RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 TRADDQ15628 312 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 FAM153CQ494X1 144 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 GNASQ5JWF2 1037 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 EPS8L1Q8TE68 723 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 DNAJB3Q8WWF6 145 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 DHX38Q92620 1227 aaKnown RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 MTMR12Q9C0I1 747 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 UPF3AQ9H1J1 476 aaKnown RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 CDHR5Q9HBB8 845 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 APOBEC3GQ9HC16 384 aaKnown RBP15.34■□□□□ 0.05
VPS33A-209ENST00000544349 GDF3Q9NR23 364 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 RNF186Q9NXI6 227 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 FAM153AQ9UHL3 310 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 GINS2Q9Y248 185 aa15.34■□□□□ 0.05
VPS33A-209ENST00000544349 KCNK3O14649 394 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 H2AFZP0C0S5 128 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 CXCL8P10145 99 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 FGFR4P22455 802 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 ACTN2P35609 894 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 NKX3-2P78367 333 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 SCARA3Q6AZY7 606 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 FOXR1Q6PIV2 292 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 H2AFVQ71UI9 128 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 NOP9Q86U38 636 aaKnown RBP15.33■□□□□ 0.04
VPS33A-209ENST00000544349 SLC47A2Q86VL8 602 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 EFCAB13Q8IY85 973 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 C7orf31Q8N865 590 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 USP38Q8NB14 1042 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 TPCN2Q8NHX9 752 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 NOCTQ9UK39 431 aaKnown RBP15.33■□□□□ 0.04
VPS33A-209ENST00000544349 NFU1Q9UMS0 254 aa15.33■□□□□ 0.04
VPS33A-209ENST00000544349 PGK1P00558 417 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 GNAT1P11488 350 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 CYP11B1P15538 503 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 NOP2P46087 812 aaKnown RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 NOP14P78316 857 aaKnown RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 TFAMQ00059 246 aaKnown RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 GUCY2DQ02846 1103 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 KYAT1Q16773 422 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 PALB2Q86YC2 1186 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 RPUSD2Q8IZ73 545 aaKnown RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 CASKIN2Q8WXE0 1202 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 OSMRQ99650 979 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 MTG1Q9BT17 334 aaPredicted RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 SPC25Q9HBM1 224 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 ACP6Q9NPH0 428 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 SEPT11Q9NVA2 429 aaKnown RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 RNF14Q9UBS8 474 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 NUB1Q9Y5A7 615 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 RAD51CO43502 376 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 TRPA1O75762 1119 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 TMEM191BP0C7N4 346 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 RARBP10826 455 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 DARSP14868 501 aaKnown RBP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 CHRNB2P17787 502 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 GALCP54803 685 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 CUL2Q13617 745 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 PCBP1Q15365 356 aaKnown RBP eCLIP15.32■□□□□ 0.04
VPS33A-209ENST00000544349 RPS6KA1Q15418 735 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 TAF3Q5VWG9 929 aa15.32■□□□□ 0.04
VPS33A-209ENST00000544349 EMBQ6PCB8 327 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms