RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 NUB1Q9Y5A7 615 aa13.14□□□□□ -0.31
DDX55-210ENST00000543016 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.14□□□□□ -0.31
DDX55-210ENST00000543016 SF3B1O75533 1304 aaKnown RBP eCLIP13.13□□□□□ -0.31
DDX55-210ENST00000543016 TDRD15B5MCY1 1934 aaKnown RBP13.13□□□□□ -0.31
DDX55-210ENST00000543016 TRIP11Q15643 1979 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 TULP1O00294 542 aaPredicted RBP13.13□□□□□ -0.31
DDX55-210ENST00000543016 B4GALT3O60512 393 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 FAM163BP0C2L3 166 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 AARSP49588 968 aaKnown RBP eCLIP13.13□□□□□ -0.31
DDX55-210ENST00000543016 TAF6P49848 677 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 DLG4P78352 724 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 BIRC3Q13489 604 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 GPM6BQ13491 265 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 MAN2A1Q16706 1144 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 PTPROQ16827 1216 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 SV2CQ496J9 727 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 DCAF17Q5H9S7 520 aaPredicted RBP13.13□□□□□ -0.31
DDX55-210ENST00000543016 C1orf220Q5T0J3 134 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 CDKAL1Q5VV42 579 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 TCERG1LQ5VWI1 586 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 PDXDC1Q6P996 788 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 C15orf39Q6ZRI6 1047 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 CCDC150Q8NCX0 1101 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 OR5B17Q8NGF7 314 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 CXorf38Q8TB03 319 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 SPATA18Q8TC71 538 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 ZNF516Q92618 1163 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 POP1Q99575 1024 aaKnown RBP13.13□□□□□ -0.31
DDX55-210ENST00000543016 VRTNQ9H8Y1 702 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 MARCH5Q9NX47 278 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 LMCD1Q9NZU5 365 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 AGAP1Q9UPQ3 857 aa13.13□□□□□ -0.31
DDX55-210ENST00000543016 PRG3Q9Y2Y8 225 aaPredicted RBP13.13□□□□□ -0.31
DDX55-210ENST00000543016 LRRC10BA6NIK2 292 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 KCNJ18B7U540 433 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 GOLGA6L19H0YKK7 550 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 SYN3O14994 580 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 ARHGEF15O94989 841 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 KIF4AO95239 1232 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 EFEMP2O95967 443 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 AFPP02771 609 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 SOD2P04179 222 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 ITGB3P05106 788 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 KRT19P08727 400 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 ZNF18P17022 549 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 CDK11BP21127 795 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 POLR2BP30876 1174 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 MTIF2P46199 727 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 GCLMP48507 274 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 MXI1P50539 228 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 LILRA4P59901 499 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 PPP3CAQ08209 521 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 KCNJ12Q14500 433 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 NCAPHQ15003 741 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 IQCB1Q15051 598 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 SGSM1Q2NKQ1 1148 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 TCP11X2Q5H9J9 407 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 SMYD5Q6GMV2 418 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 FUT10Q6P4F1 479 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 DPH6Q7L8W6 267 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 DHX40Q8IX18 779 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 AOPEPQ8N6M6 819 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 APPL2Q8NEU8 664 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 SPPL3Q8TCT6 385 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 ARNTL2Q8WYA1 636 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 SUSD3Q96L08 255 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 OXCT2Q9BYC2 517 aaPredicted RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 IMPG2Q9BZV3 1241 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 FAM124BQ9H5Z6 455 aaPredicted RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 GOLGA2P5Q9HBQ8 144 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 NGRNQ9NPE2 291 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 SAMSN1Q9NSI8 373 aaKnown RBP13.12□□□□□ -0.31
DDX55-210ENST00000543016 FANCLQ9NW38 375 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 GDAP2Q9NXN4 497 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 HCSTQ9UBK5 93 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 SIX4Q9UIU6 781 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 DSEQ9UL01 958 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 COQ4Q9Y3A0 265 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 PTPRJQ12913 1337 aa13.12□□□□□ -0.31
DDX55-210ENST00000543016 ANK1P16157 1881 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 PDCD11Q14690 1871 aaKnown RBP13.11□□□□□ -0.31
DDX55-210ENST00000543016 GTPBP10A4D1E9 387 aaKnown RBP13.11□□□□□ -0.31
DDX55-210ENST00000543016 NT5C1B-RDH14C9J2C7 533 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 M0QZQ0 153 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 SOX1O00570 391 aaPredicted RBP13.11□□□□□ -0.31
DDX55-210ENST00000543016 ITGB1P05556 798 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 TRIM49P0CI25 452 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 TRIM49CP0CI26 452 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 P4HA1P13674 534 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 FMO5P49326 533 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 GUCY2FP51841 1108 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 CREMQ03060 361 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 KCNH2Q12809 1159 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 NCOA4Q13772 614 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 USP41Q3LFD5 358 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 TDRD10Q5VZ19 366 aaKnown RBP13.11□□□□□ -0.31
DDX55-210ENST00000543016 LMBRD2Q68DH5 695 aaPredicted RBP13.11□□□□□ -0.31
DDX55-210ENST00000543016 CREBRFQ8IUR6 639 aa13.11□□□□□ -0.31
DDX55-210ENST00000543016 RNF168Q8IYW5 571 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms