RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ASB7Q9H672 318 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 PDE11AQ9HCR9 933 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 HSPBP1Q9NZL4 362 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 CHMP5Q9NZZ3 219 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 UBQLN1Q9UMX0 589 aaKnown RBP10.56□□□□□ -0.72
YBX3-212ENST00000542002 SSX2IPQ9Y2D8 614 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 DERAQ9Y315 318 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 TIMM13Q9Y5L4 95 aaPredicted RBP10.56□□□□□ -0.72
YBX3-212ENST00000542002 PTPRJQ12913 1337 aa10.56□□□□□ -0.72
YBX3-212ENST00000542002 TCHHQ07283 1943 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 M0QZQ0 153 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 RFPL2O75678 378 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 RHOBTB3O94955 611 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 MYL1P05976 194 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 OR1D2P34982 312 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 AARSP49588 968 aaKnown RBP eCLIP10.55□□□□□ -0.72
YBX3-212ENST00000542002 LILRA4P59901 499 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 FAM160A1Q05DH4 1040 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 ELAVL2Q12926 359 aaKnown RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 PSMD2Q13200 908 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 PSMD5Q16401 504 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 VARS2Q5ST30 1063 aaKnown RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 RARS2Q5T160 578 aaKnown RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 LMBRD2Q68DH5 695 aaPredicted RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 ARMCX5Q6P1M9 558 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 TMC5Q6UXY8 1006 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 STXBP4Q6ZWJ1 553 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 PPFIBP1Q86W92 1011 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 BRSK2Q8IWQ3 736 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 GPD1LQ8N335 351 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 TMEM87AQ8NBN3 555 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 PLEKHO2Q8TD55 490 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 NOC3LQ8WTT2 800 aaKnown RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 TSPAN18Q96SJ8 248 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 POP1Q99575 1024 aaKnown RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 ADAM7Q9H2U9 754 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 EXOC1Q9NV70 894 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 DMAC2Q9NW81 257 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 DPP3Q9NY33 737 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 RBAKQ9NYW8 714 aaPredicted RBP10.55□□□□□ -0.72
YBX3-212ENST00000542002 MAPK8IP1Q9UQF2 711 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 C2CD2Q9Y426 696 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 BRWD1Q9NSI6 2320 aa10.55□□□□□ -0.72
YBX3-212ENST00000542002 TDRD15B5MCY1 1934 aaKnown RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 GOLGA6L4A6NEF3 574 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 TULP1O00294 542 aaPredicted RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 TRAPPC3O43617 180 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 IL18RAPO95256 599 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 LDHAP00338 332 aaKnown RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 ADH1AP07327 375 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 HOXB8P17481 243 aaPredicted RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 MCM4P33991 863 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 ANP32AP39687 249 aaKnown RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 CYP2J2P51589 502 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 TFAMQ00059 246 aaKnown RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 ZP2Q05996 745 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 RAB33AQ14088 237 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 SMYD4Q8IYR2 804 aaPredicted RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 C1orf127Q8N9H9 656 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 BEST2Q8NFU1 509 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 OR5B17Q8NGF7 314 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 SPATA20Q8TB22 786 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 ZNF516Q92618 1163 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 ZNF707Q96C28 371 aaPredicted RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 MAN1C1Q9NR34 630 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.54□□□□□ -0.72
YBX3-212ENST00000542002 MTRRQ9UBK8 725 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 SIX4Q9UIU6 781 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 NUB1Q9Y5A7 615 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 BACE2Q9Y5Z0 518 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 CDY1Q9Y6F8 540 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 UBE4BO95155 1302 aa10.54□□□□□ -0.72
YBX3-212ENST00000542002 TCF20Q9UGU0 1960 aaKnown RBP10.54□□□□□ -0.72
YBX3-212ENST00000542002 CCDC195A0A1B0GUA6 201 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 FSD2A1L4K1 749 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 ZNF233A6NK53 670 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 SYN3O14994 580 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 OAZ2O95190 189 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 PAPLNO95428 1278 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 VNN2O95498 520 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 GLUD1P00367 558 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 CASP4P49662 377 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 SNRPFP62306 86 aaKnown RBP10.53□□□□□ -0.72
YBX3-212ENST00000542002 KCNB1Q14721 858 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 CBX2Q14781 532 aaPredicted RBP10.53□□□□□ -0.72
YBX3-212ENST00000542002 SNRNP35Q16560 246 aaKnown RBP10.53□□□□□ -0.72
YBX3-212ENST00000542002 ADHFE1Q8IWW8 467 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 C12orf56Q8IXR9 622 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 GJD3Q8N144 294 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 KREMEN2Q8NCW0 462 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 TMEM174Q8WUU8 243 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 SENP8Q96LD8 212 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 MFSD14AQ96MC6 490 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 TIGD1Q96MW7 591 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 POMKQ9H5K3 350 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 TSHZ2Q9NRE2 1034 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 FBXL5Q9UKA1 691 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 PCDHB8Q9UN66 801 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 PCDHA5Q9Y5H7 936 aa10.53□□□□□ -0.72
YBX3-212ENST00000542002 TRIP11Q15643 1979 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms