RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 FCARP24071 287 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 MCM4P33991 863 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 CCT6AP40227 531 aaKnown RBP13.42□□□□□ -0.26
SNHG1-216ENST00000541416 OSTNP61366 133 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 SPEM2Q0P670 501 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 SIM2Q14190 667 aaPredicted RBP13.42□□□□□ -0.26
SNHG1-216ENST00000541416 XKR4Q5GH76 650 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.42□□□□□ -0.26
SNHG1-216ENST00000541416 MAP4K3Q8IVH8 894 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 MFSD6LQ8IWD5 586 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 NECAB1Q8N987 351 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 FAM200AQ8TCP9 573 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 TCEAL4Q96EI5 215 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 BHMT2Q9H2M3 363 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 TMEM134Q9H6X4 195 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 TRPV4Q9HBA0 871 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 FBXL5Q9UKA1 691 aa13.42□□□□□ -0.26
SNHG1-216ENST00000541416 TRIP11Q15643 1979 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 WNT7AO00755 349 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 SLC30A4O14863 429 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 EDN1P05305 212 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 ADRB1P08588 477 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 MCF2P10911 925 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 MYL4P12829 197 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 TDGF1P13385 188 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 TGM1P22735 817 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 KPNA1P52294 538 aaPredicted RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 TWF1Q12792 350 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 GNL2Q13823 731 aaKnown RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 MRPL58Q14197 206 aaKnown RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 CD300LGQ6UXG3 332 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 VITQ6UXI7 678 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 ALKAL1Q6UXT8 129 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 SPEM1Q8N4L4 309 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 NSUN7Q8NE18 718 aaKnown RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 ZSCAN18Q8TBC5 510 aaPredicted RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 SUSD3Q96L08 255 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 DRC1Q96MC2 740 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 ACO2Q99798 780 aaKnown RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 CDT1Q9H211 546 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 C8orf33Q9H7E9 229 aaPredicted RBP13.41□□□□□ -0.26
SNHG1-216ENST00000541416 C17orf75Q9HAS0 396 aa13.41□□□□□ -0.26
SNHG1-216ENST00000541416 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.4□□□□□ -0.26
SNHG1-216ENST00000541416 EIF5BO60841 1220 aaKnown RBP13.4□□□□□ -0.26
SNHG1-216ENST00000541416 DTNBO60941 627 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 SEC24AO95486 1093 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 CCNE1P24864 410 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 FOSBP53539 338 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 EPHB3P54753 998 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 EPHA5P54756 1037 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 PEX3P56589 373 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 SOX4Q06945 474 aaPredicted RBP13.4□□□□□ -0.26
SNHG1-216ENST00000541416 STRN3Q13033 797 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 CSRP2Q16527 193 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 LPAL2Q16609 132 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 ME3Q16798 604 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 DGKKQ5KSL6 1271 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 MPZL3Q6UWV2 235 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 HAUS6Q7Z4H7 955 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 LONP2Q86WA8 852 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 ZNF687Q8N1G0 1237 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 CEP120Q8N960 986 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 CHAMP1Q96JM3 812 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 PARD6AQ9NPB6 346 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 KMT5AQ9NQR1 393 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 SEMA4GQ9NTN9 838 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 CNTN3Q9P232 1028 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 LRWD1Q9UFC0 647 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 NOL7Q9UMY1 257 aaKnown RBP13.4□□□□□ -0.26
SNHG1-216ENST00000541416 DNM3Q9UQ16 869 aa13.4□□□□□ -0.26
SNHG1-216ENST00000541416 EPG5Q9HCE0 2579 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 TICRRQ7Z2Z1 1910 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 CITO14578 2027 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 HEPACAM2A8MVW5 462 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 DPYSL4O14531 572 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 CHADO15335 359 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 KRT37O76014 449 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 FGF19O95750 216 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 CHRNB1P11230 501 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 IGFBP6P24592 240 aaPredicted RBP13.39□□□□□ -0.27
SNHG1-216ENST00000541416 VIPR2P41587 438 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 CCR2P41597 374 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 ALDH1A3P47895 512 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 NPTX2P47972 431 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 TRAPPC10P48553 1259 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 FXR2P51116 673 aaKnown RBP eCLIP13.39□□□□□ -0.27
SNHG1-216ENST00000541416 YWHAHQ04917 246 aaPredicted RBP13.39□□□□□ -0.27
SNHG1-216ENST00000541416 PDIA5Q14554 519 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 ZNF174Q15697 407 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 ST3GAL2Q16842 350 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 PPM1JQ5JR12 505 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 USP37Q86T82 979 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 HS6ST3Q8IZP7 471 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 DDX12PQ92771 950 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 ZMAT2Q96NC0 199 aaKnown RBP13.39□□□□□ -0.27
SNHG1-216ENST00000541416 TBC1D32Q96NH3 1257 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 TIPINQ9BVW5 301 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 FOXP1Q9H334 677 aaPredicted RBP13.39□□□□□ -0.27
SNHG1-216ENST00000541416 PTPRHQ9HD43 1115 aa13.39□□□□□ -0.27
SNHG1-216ENST00000541416 DDX19AQ9NUU7 478 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms