RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 PDE6CP51160 858 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 ZNF132P52740 706 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 AP3M2P53677 418 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 NKX3-2P78367 333 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 HSP90AA2PQ14568 343 aaPredicted RBP13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 KCNA10Q16322 511 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 TEX35Q5T0J7 233 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 MEI1Q5TIA1 1274 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 LLGL2Q6P1M3 1020 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 CPNE8Q86YQ8 564 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 CREG2Q8IUH2 290 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 NOA1Q8NC60 698 aaKnown RBP13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 KLHDC9Q8NEP7 349 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 SLC35G2Q8TBE7 412 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 ANKRD36BP1Q96IX9 119 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 ALS2CR12Q96Q35 445 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 CFHR5Q9BXR6 569 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 NXF3Q9H4D5 531 aaKnown RBP13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 GTF2IRD1Q9UHL9 959 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 HYOU1Q9Y4L1 999 aa13.16□□□□□ -0.3
AP003559.1-201ENST00000540906 PPEF2O14830 753 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 TNNC2P02585 160 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 ITGB3P05106 788 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 ASGR1P07306 291 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 KRT19P08727 400 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 TRPC3Q13507 836 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 WHAMMP3Q1A5X7 153 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 ZNF699Q32M78 642 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 FMNL3Q8IVF7 1028 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 TXLNBQ8N3L3 684 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 OSBPL9Q96SU4 736 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 NIF3L1Q9GZT8 377 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 RNF39Q9H2S5 420 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 STXBP5LQ9Y2K9 1186 aa13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 NOC2LQ9Y3T9 749 aaKnown RBP13.15□□□□□ -0.3
AP003559.1-201ENST00000540906 A0A0A6YYK5 440 aaPredicted RBP13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 ANKRD62A6NC57 917 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 BUB1BO60566 1050 aaPredicted RBP13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 RTN2O75298 545 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 AKAP5P24588 427 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 CDH8P55286 799 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 CLEC16AQ2KHT3 1053 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 SGSM1Q2NKQ1 1148 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 C2CD6Q53TS8 623 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 MAP3K21Q5TCX8 1036 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 SLC27A1Q6PCB7 646 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 PHLDB2Q86SQ0 1253 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 FAM228AQ86W67 206 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 PASD1Q8IV76 773 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 RFFLQ8WZ73 363 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 MS4A14Q96JA4 679 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 ACAP3Q96P50 834 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 BEGAINQ9BUH8 593 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 APOL6Q9BWW8 343 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 SMYD3Q9H7B4 428 aa13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 NXF1Q9UBU9 619 aaKnown RBP13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 PIN4Q9Y237 131 aaKnown RBP13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 PDCD11Q14690 1871 aaKnown RBP13.14□□□□□ -0.31
AP003559.1-201ENST00000540906 EFCAB8A8MWE9 144 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CTSHP09668 335 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 UNGP13051 313 aaPredicted RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TBXAS1P24557 533 aaPredicted RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 POLR2BP30876 1174 aaKnown RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CRYBB1P53674 252 aaPredicted RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 ORC1Q13415 861 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TMEM132DQ14C87 1099 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 DCAF4L1Q3SXM0 396 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF394Q53GI3 561 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 FAM47CQ5HY64 1035 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 GLRA4Q5JXX5 417 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 SLFN11Q7Z7L1 901 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 ARRDC4Q8NCT1 418 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CTNNBL1Q8WYA6 563 aaPredicted RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 C18orf25Q96B23 403 aaPredicted RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 SNX27Q96L92 541 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TWNKQ96RR1 684 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CISHQ9NSE2 258 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TUBGCP4Q9UGJ1 667 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 HMGXB4Q9UGU5 601 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CDY2AQ9Y6F7 541 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 SCN1AP35498 2009 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 DNAH12Q6ZR08 3092 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 KPNA6O60684 536 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 RECQL4O94761 1208 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 GZMAP12544 262 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 BRD2P25440 801 aaKnown RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 GNA15P30679 374 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 MRPS6P82932 125 aaKnown RBP13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TUBB2AQ13885 445 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 NAA35Q5VZE5 725 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 NOTUMQ6P988 496 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CEP112Q8N8E3 955 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CPA5Q8WXQ8 436 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TFAP2BQ92481 460 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CYFIP2Q96F07 1278 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 KIF12Q96FN5 646 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 BTBD6Q96KE9 485 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 ADPGKQ9BRR6 497 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 TUBB2BQ9BVA1 445 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CELF4Q9BZC1 486 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 859.6 ms