RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PTGIRP43119 386 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 SERPINB4P48594 390 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 DRG2P55039 364 aaKnown RBP13.71□□□□□ -0.22
MSH6-210ENST00000540021 NR1H3Q13133 447 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 THOC5Q13769 683 aaKnown RBP13.71□□□□□ -0.22
MSH6-210ENST00000540021 C1orf186Q6ZWK4 172 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 OTOP1Q7RTM1 612 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 ZSWIM2Q8NEG5 633 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 FGD4Q96M96 766 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 TMEM121Q9BTD3 319 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 TSSK1BQ9BXA7 367 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 CYP4F11Q9HBI6 524 aa13.71□□□□□ -0.22
MSH6-210ENST00000540021 PPP1R1BQ9UD71 204 aaPredicted RBP13.71□□□□□ -0.22
MSH6-210ENST00000540021 CNGA1P29973 690 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 RFC5P40937 340 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 ARL4CP56559 192 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 MTFR1Q15390 333 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 ATP13A4Q4VNC1 1196 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 WDR78Q5VTH9 848 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 ACER1Q8TDN7 264 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 hCG_2014768A0A024R1R8 64 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 H3BRJ5 948 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 BNIP1Q12981 228 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 SEZ6Q53EL9 994 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 ZNF668Q96K58 619 aaPredicted RBP13.7□□□□□ -0.22
MSH6-210ENST00000540021 SHCBP1LQ9BZQ2 653 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 DCLK3Q9C098 648 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 ARMCX1Q9P291 453 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 MYH7BA7E2Y1 1941 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 COPEO14579 308 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 CALB2P22676 271 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 SSTR1P30872 391 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 CDO1Q16878 200 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 HYIQ5T013 277 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 DARS2Q6PI48 645 aaKnown RBP13.7□□□□□ -0.22
MSH6-210ENST00000540021 LDHDQ86WU2 507 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 TTC25Q96NG3 672 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 RNPEPL1Q9HAU8 725 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 NYAP2Q9P242 653 aa13.7□□□□□ -0.22
MSH6-210ENST00000540021 CCDC22O60826 627 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 ADRA1DP25100 572 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 ALDH18A1P54886 795 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 PPP2R5CQ13362 524 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 KIF22Q14807 665 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 Q4G0T1 1027 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 KCTD6Q8NC69 237 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 FAM81BQ96LP2 452 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 MCEEQ96PE7 176 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 THTPAQ9BU02 230 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 PAPOLBQ9NRJ5 636 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 PSMC3IPQ9P2W1 217 aaPredicted RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 SMG5Q9UPR3 1016 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 CHD4Q14839 1912 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 LRP6O75581 1613 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 B2RBV5 119 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 GZMAP12544 262 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 PECAM1P16284 738 aaPredicted RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 PSMA2P25787 234 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 MRPS35P82673 323 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 TFAMQ00059 246 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 ZNF268Q14587 947 aaPredicted RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 HADHQ16836 314 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 FAM182AQ5T1J6 154 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 STK32AQ8WU08 396 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 FAM111AQ96PZ2 611 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 RAVER2Q9HCJ3 691 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 KCNQ5Q9NR82 932 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 MAGED2Q9UNF1 606 aaPredicted RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 LMNAP02545 664 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 DESP17661 470 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 KCNT1Q5JUK3 1230 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 RBM41Q96IZ5 413 aaKnown RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 ZNF570Q96NI8 536 aa13.69□□□□□ -0.22
MSH6-210ENST00000540021 SAE1Q9UBE0 346 aaPredicted RBP13.69□□□□□ -0.22
MSH6-210ENST00000540021 MAP3K6O95382 1288 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 PTDSS1P48651 473 aaKnown RBP13.68□□□□□ -0.22
MSH6-210ENST00000540021 GRAMD1BQ3KR37 738 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 SPDYCQ5MJ68 293 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 LGSNQ5TDP6 509 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 WDR18Q9BV38 432 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 KCNH7Q9NS40 1196 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 ATF5Q9Y2D1 282 aaPredicted RBP13.68□□□□□ -0.22
MSH6-210ENST00000540021 ZHX2Q9Y6X8 837 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 PIK3R2O00459 728 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 PSMC4P43686 418 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 NFX1Q12986 1120 aaKnown RBP13.68□□□□□ -0.22
MSH6-210ENST00000540021 DLGAP5Q15398 846 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 SNX30Q5VWJ9 437 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 VSTM1Q6UX27 236 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 ISLR2Q6UXK2 745 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 SV2AQ7L0J3 742 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 SLC25A41Q8N5S1 370 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 MAGEC3Q8TD91 643 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 AGBL1Q96MI9 1066 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 ZCWPW1Q9H0M4 648 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 DNPEPQ9ULA0 475 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 SCINQ9Y6U3 715 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 POLD1P28340 1107 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 FMO1Q01740 532 aa13.68□□□□□ -0.22
MSH6-210ENST00000540021 PSMD6Q15008 389 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms